AMCG00003268


Basic Information

Item Value
gene id AMCG00003268
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16908004 ~ 16913379 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003268
GCCTGCAGAAGCACGATGGCAGAAGCTGACTCCCAAAGACCGGTCCAAAACAAGGAGCTGAAATGCCCCATTTGCTTGGATTTTTACATAGACCCGGTCCAACTGCCCTGCGGACATAACTTCTGCTTGACCTGCATCAGGGCTGTGTGGGACTGCGATATCTCAGAGGCGGGGCCATTCTTCTGCCCTGAATGCCAGATTTTCTTGGAGGCAAACCTTTCCCTGGAGGTCAACACCAGCCTACAGAAAGAGGTGCAAGATTTTACCACCAGGGACCTGGATATTCAGGAGGTACCCCCAACACCCCTTTTCATCCCGTGCGACCACTGCATTGGCACTGGCTCTGTGGCCGTGAAAACCTGCCTGACCTGCGACGCCTCTCTCTGCTCCGCACATGTGGAGCTGCACTTGAAGAAAGTTGCATTTCGGGAGCATACCGTCATCGAGGTGACAGGCAACCCCTTTTCCTTCAAGTGCTCTGAGCACCGAGAGGAGCTGAAGCTCTTCTGCCAGGAGGATGGCGTGTCTGTGTGCTCGCTGTGTGTCGTGATTGGATCGCACAAAGATCACCAAGTTGTGACTTCGCAGGAAGCATGCACGGAGATGAAGAAACTCGTGGAGGATAATTTGACACGGTTGGTGGAGAAGCGCCAAGCCGCAGAAGAATCAATGAGGGGATTGGAGTGTTTGTTTAGCGAGACCGCGTCCCGGACAGCTGACTTTAGAGAAAGCATCCATGAAAAGTACAgcagaatgaaaaagctgatcgAGGAAGATGAGCAGCTGATCATGAACATTTTGGAAGCTGAAGAAATGTATTCTCTGAAGCAGCTGGAGTGTAAAAAGGAGGCGGTGGAATCTCAGATCAGGGAGACGGAAGTGCTAATGAATACCAGCAAGTCGCTCATGCAAGAACCAAACACTTTGACATTCCTACAGGATCCAATATCTCCGGCATCTTCATGGTGTAGTATGGCGAAAGACAATGCTGAATCTGCAAAGTTTAAAACGGTAGAAAACCTAGTGGAGGAATTATCCAGCACTATATCGTGTCACCTCCCAAGAATGAATGTTACCTTCAACCCTTACACAGCTCACCCTAAACTCAAGGTTTCTCAGAACAAGATGGAGGTCCGCTGGAGTAAACAGCCCCTTCAGCACAGTGACAACTCGGAGAGGTTTGACTCTCAGTACAGCGTTCTTGCAGAGAACAGTCTCACTGCTGGACGCCATTACTGGGAGGTCTTAGTGTATGACAAACCATACTGGCTGATCGGAATAGCTTATGCTTCAATGCCAAGAAAAGGTGGGAAAAACCTGAACTTTACCAATTTAGGGATGAACAAAGTTTCATGGTGTGTTTACCACAGCAATGGACAGTACTTGGCCTGCCATGACTCTCAAGAAACAGTCCTGTCAGTTCAGGGGAAACTGGACAAGCTGGGTGTCTGGGTGGACATTGATAACCAAGTCCTGTCTTTCTACAATGCTGATACTCTAACTCAACTCCATTCCTTCTCAGTTCAGTACTTGGAAGAGGTCTATCCAGTGTTCAACCCCTGCATTGACGTCAATGAGAAAAACTGCCAGCCCTTCACGCTATTTCATCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003268 True 1614 mRNA 0.49 5 16908004 16913379

Neighbor

gene id symbol gene type direction distance location
AMCG00003272 NA coding downstream 29872 16863943 ~ 16878132 (-)
AMCG00003271 NA coding downstream 45280 16853455 ~ 16862724 (-)
AMCG00003273 LOC107566408 coding downstream 78553 16826205 ~ 16829451 (-)
AMCG00003275 NA coding downstream 86984 16799690 ~ 16821020 (-)
AMCG00003269 NA coding downstream 109815 16788231 ~ 16798189 (-)
AMCG00003279 tcf7l2 coding upstream 68490 16981869 ~ 17071511 (-)
AMCG00003278 NA coding upstream 220730 17134109 ~ 17138040 (-)
AMCG00003280 NA coding upstream 295056 17208435 ~ 17263614 (-)
AMCG00003283 vti1a,LOC107566351 coding upstream 379137 17292516 ~ 17304410 (-)
AMCG00003287 acsl5,LOC107566323,LOC107702457,LOC107755526,LOC107722228,LOC107581566,LOC107684041 coding upstream 399185 17312564 ~ 17325306 (-)
G141795 NA non-coding downstream 251837 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 409563 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 846966 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 915326 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1690197 15217474 ~ 15217807 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 1559 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 24255 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1373624 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 1391252 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 1392983 18306362 ~ 18306683 (-)
G141826 NA other downstream 159573 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 1767185 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 2233584 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 3477680 13407272 ~ 13430324 (-)
G141004 NA other downstream 4028583 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 2630258 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 2888700 19802079 ~ 19876762 (-)

Expression


Co-expression Network