AMCG00003273 (LOC107566408)


Basic Information

Item Value
gene id AMCG00003273
gene name LOC107566408
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16826205 ~ 16829451 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003273
ATGGAGCCAGGCTCTGTGGTGCGGGCTGTGTTTGAGTTCCGCCCCAGCGTTTCCGAGGAGCTGCCTCTCTTCGCCGGTGATGTCATCGAGGTGCTCAGCTTGGTGGACGAGTTCTGGCTGCTCGGGAACAAAGATGGCATCACAGGCCAGTTCCCCAGCACGTTCGTGGAGCCGGTCACCATTCCTAACACCAAAAGGGGGGACAAGCTGTATGTCTGCATCAATGACTTCAGCGCCCTGGATTCTGGAAATCTGCTCCTCAATCGAGGTGATGTCGTCGTAGGTGAAGACACCGTGGACACTAATTGGTTGAGAGGAAGGAATTGCTGGGGTGCGAAGGGAATCTTCCCGATGTCCTGTGTGAAGGTGCTACACCTCTCCTCCAGATCTCGCCAGCTGTCCAATCGGTCAGTGTCCGAGCTCCCCAGTTACGCCCTTGGCCAGGCCCGTGCTCTGATGGGCCTGTCGGCCCAGATGGAGGAAGAGCTGGGCTTCCTGGAGGGTGACGTCATCACCATTATTGGAATCCCGGAGCCAGGCTGGTTTGAGGGGGAGCTGGAGGGCAGGAGAGGGATTTTTCCCGAAGGATTTGTGGAGCTTTTGGGCCATTTGCAGGTCCGGGAGGATCCAGCAGTTCAGGACGACTATGATGTTTATGACGAAGGAGATGGTTTTGTGGAAGAGTCTGCACTGAGCACAACGGAAGCCACGGGGGTGTACGGAATCGCTCTCTATGACTTCAGGGCCATTGAACCGGGAGAACTTGACTTTGACGTGGGCAACAAAATCCAGATTATCAACACTTTGGAAGATGGCTGGCTTGAGGGGGCTGTCAACGGCAGACGGGGAATATTCCCTCACAGGTTCGTCAAGATCGAAGAGCAGGTGACTGAGAACCAAGTGGAGCAATCGACGTTAGAATACACCCAAGAAATGAAGAACAAACCTAGCTATGGCTCTTATGATACCAGTAACAACAACAGCTACGACTGTAAGAGTGAAGAAGACAGCAGACCAGTGTGGGACTTGGATTACTTCGACAAATCTGATTATCGCGGATCCGAAACTACATGGATGGAAGATCCTTCAGATGGAAAATCATCACCTGTCAGTTCAAAGCAGGTCCAAGATCCTAGCAGAGATCAGACAAAAGACACTTCTCGAGGGAATCGGGTGAACCGGGCAACAGCAGACACTGCACAAAGCACTAAAGACGGCCCTTCTCCTTCTCGTAGAGGAATTACAAGAACAAATTCGGCCCCTTCCAAACCCAGGCTTCCTCCAAGGCCAAGTCTACATTCTTTAAGCAATAGGCGGCACTGCACTGTAGCAGATACGTCAGCAGACCAAAAGATTGGAAGTAGCAATACCGAGGTCGCTCCAGCACCCGCTACTAGAACACTAAGCTTATTACCAAGAAACAAAGATCAGGAGAGTTTACACAATAGCTGGTCTAAAGACAGTGGCTGTTTACGTGAGCTCGCTTCTAAGAGCAAAAATGAGGTTTTCCAGGACCTAGCATGTTGGGTTGAAGACCAgaagctgaaaaacaaaccccGCCACTCAAGCGTCACTGACAGCAATTTGTTACCTGGTTGCAGAAGTGAGCCAGCGGATTCCAAAAGACTGGAGTCAAATGGCCTATCCAGACCTTTCACGCTGGAGAGTCTGGCAAGTTCTCCATCTGACCTGGATTCCAAACTTTCTCAGCAGCTGGCTGAGTTTGAAATGAGTCTACCGGGTTACAAGGAAAGAGACACTAAGAGGATGTCCAGGCATTTCTCCATCCTGGATTACAGCAGTGAAAACGATATCATGAGAGGCTCTCCCACCTCCAAGAGTCAGCAGGAGGACACTTCTTCCCTAGAAAGAAGAAGAGCCTTGAGACCTCCTCCTCCCAGACCCCGGGCCCTCAAACCCTCAGGGTCACAATCTTCTCCCTCAATGTCACTGGTGAGTCCTCGAGCTGCTAGTGAAGGAAGACCTTCCCAGAGTCCCTCAGTGCTCAAGCCCTCCAGACCTGCTCCCCTTCCCCCACAGCCCTCTCCGAGGAAGAACACCGGCTCTCCGAGGCCACAGGAAAGTCTCGTGCACGAGGACGCCTGCTCTTTTAAGATGCCGGAGGAGCCTGTCTTCGATGAGGTAGAAGGACCTCAAGCAGATGGTGGCGATGGTCAAGAGACGGAACAAGATCAGTATGCGCTGCTGCTCAGGCTTCAGGAGGTGGAGAGAGACATTGAAATCTACACTAAGACGATGGAGGAGCTACGGCTGATGctcgaggaagaggaggatgagacTGCCAGGGCACAAACGCAGGAAAACATGGAGTTCTGTACCTTCAACATTGAATCTCTTACCttggagcaacaacagctcaca

Function

NR:

description
PREDICTED: dynamin-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003273 True 2382 mRNA 0.52 3 16826205 16829451

Neighbor

gene id symbol gene type direction distance location
AMCG00003275 NA coding downstream 5185 16799690 ~ 16821020 (-)
AMCG00003269 NA coding downstream 28016 16788231 ~ 16798189 (-)
AMCG00003267 casp7 coding downstream 69028 16749749 ~ 16757177 (-)
AMCG00003270 NA coding downstream 88278 16728914 ~ 16737927 (-)
AMCG00003266 NA coding downstream 115346 16681053 ~ 16710859 (-)
AMCG00003271 NA coding upstream 24004 16853455 ~ 16862724 (-)
AMCG00003272 NA coding upstream 34492 16863943 ~ 16878132 (-)
AMCG00003268 NA coding upstream 78553 16908004 ~ 16913379 (-)
AMCG00003279 tcf7l2 coding upstream 152418 16981869 ~ 17071511 (-)
AMCG00003278 NA coding upstream 304658 17134109 ~ 17138040 (-)
G141795 NA non-coding downstream 170038 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 327764 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 765167 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 833527 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1608398 15217474 ~ 15217807 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 85487 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 108183 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1457552 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 1475180 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 1476911 18306362 ~ 18306683 (-)
G141826 NA other downstream 77774 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 1685386 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 2151785 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 3395881 13407272 ~ 13430324 (-)
G141004 NA other downstream 3946784 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 2714186 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 2972628 19802079 ~ 19876762 (-)

Expression


Co-expression Network