AMCG00003277


Basic Information

Item Value
gene id AMCG00003277
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16615320 ~ 16620560 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003277
ATGTTGATTTTTCCTCAGATATCACCAAGTCAGCAGAAGAGGGTGTATCtgtctgatttacagaaaatgGATGTGAGAAAAGGATCCAAAGTGCAGGCTTGTGTGATGGAGTTTAAGGATCCAGGGAACTTTTTCATTCAGATTCAGACTGTGGAGATTATGGAGTCTCTGAGAAAGGTCACTTTAGACCTCCAGAATACATATGCCAACTCAGGCAACCATACACCCTATTTACCTGAAAAGGGAGAAGTGTGTGCTGCTAAATATTCTCAGGATCAGGCGCTGCAGTGTCAGGTGGCAGCTGTGGCGGCCCCCTTTAACGTGTGGAGCGAGGAGTGCTGCATTGCAGTGAAACGGCTTCTCCCCATGAAGAGCTCCTTGGTGACTGTGGTGGACCTGTTGGAAGACAACACCGTTTTTGCCGTCGATTTTACCCTGACAGCTATtgATTGCATTCTGAATGCAGCGTTGGAAAACTTCAAGAAAGCAGGGGGTAAGAATGGGACTGGAGAAATGCCTCTCCCTGAACCTCTCACCCTGTGTGTGGGTGACACCTTTCCTGCTGTCGTTACCCATGTGGAGAGTCCAGAGGAGTTCATCTTTCAGAAACTGGACAATATGAGTGCCATTCAGGAGCTGCAGGTCAGTCTGAGAGAGCACTGTATGCAAACGGCAGCTTCAGAGGACTTCAGGCCCGCCCCAGGGGCAGTCTGCTGCTCCCAGTTCACAGGTAGGTGTTGCACAGTGGCAGTGGTGATGAATCCAGGAAGTCCTCTTTAG

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007276 gamete generation biological_process
GO:0048610 obsolete cellular process involved in reproduction biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003277 True 780 mRNA 0.49 5 16615320 16620560

Neighbor

gene id symbol gene type direction distance location
AMCG00003274 NA coding downstream 24487 16566771 ~ 16590833 (-)
AMCG00003255 NA coding downstream 249334 16347424 ~ 16365986 (-)
AMCG00003254 LOC106590870,LOC107580847 coding downstream 273571 16331807 ~ 16341749 (-)
AMCG00003250 LOC107689951 coding downstream 347928 16237412 ~ 16267392 (-)
AMCG00003251 NA coding downstream 395057 16211441 ~ 16220263 (-)
AMCG00003276 NA coding upstream 44180 16664740 ~ 16665930 (-)
AMCG00003266 NA coding upstream 60493 16681053 ~ 16710859 (-)
AMCG00003270 NA coding upstream 108354 16728914 ~ 16737927 (-)
AMCG00003267 casp7 coding upstream 129189 16749749 ~ 16757177 (-)
AMCG00003269 NA coding upstream 167671 16788231 ~ 16798189 (-)
G141740 NA non-coding downstream 116879 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 554282 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 622642 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1397513 15217474 ~ 15217807 (-)
G141571 NA non-coding downstream 1442872 15163954 ~ 15172448 (-)
G141795 NA non-coding upstream 33131 16653691 ~ 16656167 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 294378 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 317074 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1666443 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 1684071 18304631 ~ 18304978 (-)
AMCG00003231 NA other downstream 1474501 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 1940900 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 3184996 13407272 ~ 13430324 (-)
G141004 NA other downstream 3735899 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 3759979 12851021 ~ 12855341 (-)
G141826 NA other upstream 127501 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 2923077 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 3181519 19802079 ~ 19876762 (-)

Expression


Co-expression Network