Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00003281 |
| gene name | zdhhc6,LOC107684040,LOC107755527 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030139.1 |
| NCBI id | CM030139.1 |
| chromosome length | 23121578 |
| location | 17306500 ~ 17311221 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| zdhhc6 | Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC6 (zinc finger DHHC-type palmitoyltransferase 6). |
| description |
|---|
| PREDICTED: palmitoyltransferase ZDHHC6 |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016746 | transferase activity, transferring acyl groups | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K20031 | ZDHHC6; palmitoyltransferase ZDHHC6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00003281 | True | 1209 | mRNA | 0.47 | 10 | 17306500 | 17311221 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003265 | NA | coding | upstream | 365393 | 16933521 ~ 16941107 (+) |
| AMCG00003264 | aldh18a1,LOC107081732 | coding | upstream | 375645 | 16914965 ~ 16930855 (+) |
| AMCG00003263 | NA | coding | upstream | 516542 | 16771324 ~ 16789958 (+) |
| AMCG00003262 | NA | coding | upstream | 557974 | 16745224 ~ 16748526 (+) |
| AMCG00003261 | NA | coding | upstream | 584438 | 16711272 ~ 16722062 (+) |
| AMCG00003282 | NA | coding | downstream | 21113 | 17332334 ~ 17354879 (+) |
| AMCG00003284 | NA | coding | downstream | 65852 | 17377073 ~ 17402750 (+) |
| AMCG00003295 | smndc1 | coding | downstream | 581002 | 17892223 ~ 17896705 (+) |
| AMCG00003301 | NA | coding | downstream | 729554 | 18040775 ~ 18059015 (+) |
| AMCG00003302 | xpnpep1,LOC106512107,LOC106589391 | coding | downstream | 750215 | 18061436 ~ 18073141 (+) |
| G141885 | NA | non-coding | upstream | 271258 | 17032425 ~ 17035242 (+) |
| G141829 | NA | non-coding | upstream | 505188 | 16798959 ~ 16801312 (+) |
| G141592 | NA | non-coding | upstream | 2051656 | 15252840 ~ 15254844 (+) |
| G141582 | NA | non-coding | upstream | 2088949 | 15217242 ~ 15217551 (+) |
| G141574 | NA | non-coding | upstream | 2116155 | 15189983 ~ 15190345 (+) |
| G141955 | NA | non-coding | downstream | 206499 | 17517720 ~ 17517921 (+) |
| G141965 | NA | non-coding | downstream | 391951 | 17703172 ~ 17703460 (+) |
| G141966 | NA | non-coding | downstream | 401439 | 17712660 ~ 17712864 (+) |
| G141999 | smc3,LOC107685530 | non-coding | downstream | 527490 | 17838711 ~ 17840604 (+) |
| G142014 | NA | non-coding | downstream | 628640 | 17939861 ~ 18000435 (+) |
| AMCG00003256 | NA | other | upstream | 747294 | 16527189 ~ 16559206 (+) |
| AMCG00003257 | ablim1 | other | upstream | 805506 | 16464294 ~ 16500994 (+) |
| AMCG00003207 | NA | other | upstream | 2700952 | 14601317 ~ 14605548 (+) |
| AMCG00003195 | NA | other | upstream | 3006507 | 14283850 ~ 14299993 (+) |
| G141331 | NA | other | upstream | 3121857 | 14180780 ~ 14184643 (+) |
| G141962 | NA | other | downstream | 365058 | 17676279 ~ 17678522 (+) |
| AMCG00003291 | bbip1 | other | downstream | 410023 | 17721244 ~ 17725381 (+) |
| G142078 | NA | other | downstream | 1277353 | 18588574 ~ 18692204 (+) |
| G142172 | NA | other | downstream | 2224472 | 19535693 ~ 19537091 (+) |
| AMCG00003323 | rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 | other | downstream | 2307660 | 19618881 ~ 19633150 (+) |
