AMCG00003284


Basic Information

Item Value
gene id AMCG00003284
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17377073 ~ 17402750 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003284
GCGGCTGGTCGTCACTTTGAGCGTCTTCAAGGACGGGCTCGGCACAAAGAGCGGCGCCTGCGGTCCACACGCCAGCGATGCTGCGCAGAGAGGCTCTTTTCACGgTGTGTTGTTGGTACACGCTATAAGGGGGCAATGGAGGAGGTAGGAGCCTCTTTTGGAGTACAGGACAATGTGTTCATGGCCAATTCCTTTGACCAGGGAGGAAGTCGATGGAAACAGCCAAGTGATGACTTGGAGCGCAGTTCCAGCCCCTCTGTTCTAAGGTCCGTATCCTCCACGTGGAAAGAGGGTCTTCTGAACCGAAAGAGGCCCTTTGTAGGCAGATGTTGTCACTCCTGTACTCCTCAGAGCAAGGAAAAACTCTTCAATTCCAGTATACCGTCACTGGGTCTGCGGAATGTCATTTACATCAATGAAACGCATACCAGGCACAGAGGGTGGTTGGCCAGGCGGCTCTGCTATGTCCTCTTTGTTCTGGAGCATGACGTTCGGAAGGACATGTTCGCTCGAAACGTGGTGGAGAACGTGCTGAAGAACAGCAGAATGACAGGCTGGGTGCTTCTTAAATTGTTCAATGGCTTCTTCTGGAGTATCCAGATTCACAAAGGACAGCTTGAGATGGTGAAAAAGGCTGCAACAGAGCACAATGCTCCTTTAGTCTTTCTGCCAGTGCATAAGTCCCACATCGACTACCTGCTGCTGACCTTCATCCTGTTCTGTCACAACATCAAAGCACCGCACATTGCGGCTGGAAACAACCTCAATATTCCTATCTTCAGCACGTTGATACGCAAACTTGGAGGCTTCTTCATAAGACGCAGGCTGGATGAGACTCCCGGTGGAAAGAAGGATGTCCTGTACCGTTCCCTTCTTCATGCAtaCACCGAGGAGCTGCTCAGACAGCAGCAGTTCCTGGAGATCTACCTGGAAGGCACCCGGTCCCGCAGTGGGAAACCTTCCCCAGCCAGGGCCGGCCTGCTGTCCATCGTGGTGGACGCTCTCTGCTCCAGCTCCATCCCAGACGTGCTCATTGTGCCCGTGGGCATCTCTTACGACCGCATTATTGAGGGGAATTACAACAGTGAACAGCTGGGAAAGCCCAAGAAGAACGAGAGTCTATGGGGTGTAGCCCGTGGGGTGTTCAGGATGCTGCGGAAGAACTACGGCTGTGTCAGGGTGGATTTCACACAGCCCTTCTCTCTGAAGGAGTACCTCGATACTCAGAGAAACAAGCAGCTTCCCGCCCCCCTCACTCTGGAACAGATCATGGTTCCTGCCATCGTTGCAGCACAGCCAGACCAGCCTGTTTTCAATGGAGAAGAGGAAGTCCACCTCAATTCCAGGGACCTAACAGATGAACCGTGGAGACGGCAAGTCATCGCCAACTTGGCCAAGCATGTGCTCTTCACTGCCAATAAATCTTCAGCTGTGATGTCTACGCACATAGTCGCTTGCTTGCTCTtgtacagacacagagacGGCGTCTTCTTGTCCAAGCTTGTGGAAGACTTCTTCTCCATGAAAGAGGAGATTCTATCGAGGGACTTTGATCTGGGCTTCTCGGGCAACTCGGAGGACGTGGTCATGCACGCCCTGCACTTGCTGGGCAACTGCGTGACCGTGACCAACGCCGGCCGCAACGCCGAGTTCTGCATCTCCCCCCGCACGACCATCCCTGCCTTATTTGAACTGAACTTCTATAGCAACGGCCTCTTCCATGTTTTCATCACGGAGGCCATCATAGCTTGCAGTGTCCTGGCTATGCTGAGGGAACAGACTGCAGATCTGGTTGAGAGCACCTCAAAGACTCTGGTCAGCCAGGAAAGATTGATCAGAAAAGCCGCCGGTCTCTCCCAGTTCTTGTCAAATGAAGTGGCTGTTGCTTTACCCTGCCAGATGGTTTACCAGGTCTTTAACGACACCTTGGGGAGGTTAATCCAGTATGGTGTGCTACTAGTCGCAGAGgaggagcaggaggaacTCAGCCCCACTGAGGAGCCCTGGCCCAAGAAGTTCCCCGAGCCCCTGTCTTGGAGGAGCGATGAGGAGGACGAGGACAGCGACTTTGGGGAGGAGCAAAGAGACCGATATCTGAAGGTGAGCCTGTCCCCAGAGCACCAGGAGTTCTTCACCTTCCTGCAGAGGATCCTGGCCCCCGTCCTCGAGGCCTACAGCGCCGCCGCCATCTTTGTGCATAGTTTGAAGAGCCCCATCACAGAGAGCGAATACACGCACCAGCTGTTCAGATACCTTCTGACCAGAACGGAGAAAAAAGTGGCTGCATTTGGAGAGAGTGCAACACACTACCTTGTGAAGAatacagttaaaacatttaaagaactGGGGGTCTTCAAAGAAAAACGTGAAGGCGGTGTGACAACGCTGGAGCTGAGCACTACTTTTCTACCTCAAGCAAACCGAAACAAGCTGCTTCAGTACATCCTTGGTTTCAGTTTGCTCTAAGCTGCATTTTCAACTTCACCAAGGGGGACGCAGTCAGTGCGCAAAAGGGCTTTTACTGGCTAGTAAAAAGGTGCTACTCTATGGCAAAGCTTTACCTGGAAGTGCCTTCATAAAGTACTAATGAATAAGAGactttcaccttttttttttttttttttccttttttttttatgaaatgtcTCCCAAATTTAATGTGCAGCTAGTATACATGTTAATCACATTAACACTGATGCATCAATAGAGCCTGTTactgtattttgaatgtttgcCAGTGAAAGCCCTTgcattcttttcttttaactCTCAGAATAAGGTTTTGTTACTTAACCCGTCTCTTGCTCgagattaatattaatatccaCAGAGCTAAAATGTACAAGTTGCCTTCAGTATAAAATGCTGAATATACACTACAGTAATAAATAAGGGCATTAATTCTAGAATCCTACATAGCATGTGGTAGGAAATAAAGGTTCCCTCAAATTATTATTCTAATACAAGCTGTTTTTGTACCATTTTAGAAATGGTagtaaatgtaaaagcaagcaaGTGCATTTGGCATCAGTACTGGTTAATCATGTCCGATTATTCAGGAGTTGGGGACTTTTGGGAAGTTGGATTGGTAAACGTTCAGCTCCAGTAGAATTCTCGGATTTCAATGTGACATCACCGTTTGTAACTGGAAGGGAATCTGATTGGCTTGTCTGGACGGATATCTTTTTAACTAGCTAGGGAATTCTCCCAGGGTTTACACTTCAATTAACTCTTGAGCTGAAACTAGTAGTTTGTTAATGCCATATAGATTCGTAATATGTGCTGTTgaaatttcaaaatgattttaattaaaacgaAACGCATCAACTGACTGTTTGGTTTCAGTATCCCTGAGATAATTTGGGGTGTAGCATGTATCCACTTAGTCCTGTGTATAGGTGTAATCtttggaggttttttttttttggcaataaaatatatgcaagTCATCTGTGTTTGCTACAGAATAGCAGACTGTGAAGGGAGAATTTTACCTTCCATTACTACTGTTACAAGTAACATTTTTACTTCGTGAAAGTAGCAGATTAACAGGAAAGGATTTAACCAAGTCTTTTATAAATGCTCAATGGCTTGGAGCAGGTGAACCAGACTTCTTATCCTCATTGTCAGTTCACATGTGATTTCCAACAAACTGTATACAGGACtgtatacaatattaatatgggGGGGTGAATACGCCAGTACTTTTAAATGATAGAATCTGTGATTAGCTACAATAATGTGAAGCTGCCAGGGCATAACCTTGTTCTAAACTGAGTGAGGTATTCATGGTCCTAGATCTATAATATCACTGTCCGTTATTATAGTCGTTGctattgtaaatacatttctgctcTACGTGAATGCTTATGAATCACCGTCTGCTTGCAGGAATGCTGCTCACAAGCTGACCTGTTACAGGTACAATCCTAATAGAATGACAGAGCTAGAGCCTGTGCGCTTTTGAACAGCTACTCAAGCCACTGTGATATAACCTACATGccttgcagatttatttttaatttaagctgaaaaggggaaaacaaaacaaaattaaatgcatttttgagCCGTTTTATCCTAAAGCCATATAAGAAATAGTGAGACACCTGTTTATACACTGATAATGAatctaaatgaaatgaaatcttCGTTTAATTTGTTATGTTGCGTGGTTTGGCTAGTCTTCACGCATTTTGTGTCTAAAGAGCTTTCTGTTGGACTTTTGCGCCAAGCTTGAATTTGCTTCCAGTTTCAGTATGTGGTTGAAAAGTTCCAGGGAAGCTGTGTGAAAAGTCTCtacaatgtttcattttcaggtAGTTAAACCTATGGCTACCAACAAAGAACACATTAATACTGTACAAATCTTCCAAATGTACTAAGCCCAGTCCCAATAAAATGTGTCCCCCTGGCATACAGGATTAATCCAGTTTTCACACACCTGTGGTATAAATACCAGATTTTGTACTGAATGTCTGTATCAAGTCATGTGTGATGCAAAAGGCCAAGCTACCAGGTACTGTGGTGTATAAATCTGCTGCAGTGTGCATGTTGTGGTCAGATTTTGTTATAATGCACCCTTCTGGGCTCTCGGTTTTGCTGATTTTAAATAGGCAGGTCTTTGTGAGTCATATTtcgtatttttttgttttatttgcctgttttcagattgtaatttgtttacaatattttgagaGATCAGATGCAATTTTGTGCACACAAGACCACAAGCCTTCAGTATTAGGTAACACATGGGAAATTACTTTCAATTCAGAATGGGGTTTCTGTCTGATACACCAGGACATATATACATGAACTTGTCACCCAGGtaaattattgaataattatGGAATAGAAAAGattcaaaaagcaaatgtattttccgGTTTCACTGATGTTAAATCACCcaatgaagaatgaaaaatataatctaaatgcattaatttcaataaatgaaCTGAATTGGAATCCAATATTGAATCCTTCAGAAAGATTAGTCAAACAGAATTTGGATCAATCCTCCGTcccctttttttggtttgtttgtgtcttgtgCGTGTGGGTTTGTGTGCTGTAACTGTGGAATATGTATTACAGACTCACCCTGCTGATGAATGAAAAACAAGCGCGTGAAGttgaaaaattaaattgaagatCTGACTGATTGCCAGAGAGATTGCCTTGGAGCCTGTAGGGCTGCCAcacttggggtggggggggacagtTGGTGCTATGGTATATGTCACTGATACAATATAAAAAGGTTCACATTTACTGTGGTTTAAACCTGTGGTTGGACCTCGCTTGTCAGACTGCACTCGCAGTGAAAAGGCTGCCTTGGTCCTCTTTCTTCCTCAGTCTGGTATATCAAATGGGGAAACCAGTGCAGTAAGCAATAAACTCAGAGAGCAGATATTGTCTGGGGGGTTCTTATTACTTTAACAtactgttttggttttgttttttcaatttttaattttataacatgttaatattgaatatttccATAGTGACTGTGTCCATAACCCTGCCCTCTACAACCAATGGAAAGGGCTTTCGGGCTTAGGCCTAAAAAGTCTGTACACTTAACTAGTGGCACTGCAGCCATTTCTTCAACACGTTTGACACTGGTTTTCAAAATGGTACATTGCGCTTTATGGACCTCGGAGGTTCAGACAAGCAATCTGGCTGCATTCAGCTCATTGCAAAAATTGTTTCAGGATGCACAATAGCACTTGCTTACAAAGAGTAAAGCTCCTCTGGTAAATTAGCAGAATGCCTTTGCAGATCccaacaatatttacatttttctataaTGCATGTTTGTAGACACATTACCACTGTAACATAACCTCTgcaaaaaattatttaaaaaagtctgAATAACCCAACTatagtatgtttttgttttaaaactgaaatttctAATAACTTGTCCAAGAGTGTCGTGATTTGTGCCATTCCttgtcatgtattttattatttttgcctgTTACATAGCACCTGTAATGTTAATAAGCACAGTTGTcatgcagttttgtgtttttcaaataaagtaaccgattaaccaaaacaaaataaaag

Function

GO: NA

KEGG:

id description
K00629 GPAT1_2; glycerol-3-phosphate O-acyltransferase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003284 True 6087 mRNA 0.43 20 17377073 17402750

Neighbor

gene id symbol gene type direction distance location
AMCG00003282 NA coding upstream 22194 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 65852 17306500 ~ 17311221 (+)
AMCG00003265 NA coding upstream 435966 16933521 ~ 16941107 (+)
AMCG00003264 aldh18a1,LOC107081732 coding upstream 446218 16914965 ~ 16930855 (+)
AMCG00003263 NA coding upstream 587115 16771324 ~ 16789958 (+)
AMCG00003295 smndc1 coding downstream 489473 17892223 ~ 17896705 (+)
AMCG00003301 NA coding downstream 638025 18040775 ~ 18059015 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding downstream 658686 18061436 ~ 18073141 (+)
AMCG00003305 NA coding downstream 903296 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 1036757 18439507 ~ 18493790 (+)
G141885 NA non-coding upstream 341831 17032425 ~ 17035242 (+)
G141829 NA non-coding upstream 575761 16798959 ~ 16801312 (+)
G141592 NA non-coding upstream 2122229 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 2159522 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 2186728 15189983 ~ 15190345 (+)
G141955 NA non-coding downstream 114970 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 300422 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 309910 17712660 ~ 17712864 (+)
G141999 smc3,LOC107685530 non-coding downstream 435961 17838711 ~ 17840604 (+)
G142014 NA non-coding downstream 537111 17939861 ~ 18000435 (+)
AMCG00003256 NA other upstream 817867 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 876079 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 2771525 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 3077080 14283850 ~ 14299993 (+)
G141331 NA other upstream 3192430 14180780 ~ 14184643 (+)
G141962 NA other downstream 273529 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 318494 17721244 ~ 17725381 (+)
G142078 NA other downstream 1185824 18588574 ~ 18692204 (+)
G142172 NA other downstream 2132943 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 2216131 19618881 ~ 19633150 (+)

Expression


Co-expression Network