AMCG00003291 (bbip1)


Basic Information

Item Value
gene id AMCG00003291
gene name bbip1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17721244 ~ 17725381 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003291
TTCACAGTTACAAGTCATGCTCGGTGCACAGCTCAGTTACTGCActgcatgtgtgtttaatgtGGTCGAATGGTTACGTCATTACGGCCTGACGTCGTTGCTACGTAAGCGGATTTGGCGTCTGTCTAGCTGTGGCCGCTGATCcagACAGCCGTCAAACATGCCTGAAGTGAAGTCTATATTCAGAGAAGTTCTCCCCAAACAAGGGCAATTATCCATGGAGGATGTACCTACCATGGTATTGTGTAAACCAAAGTTACTGCCCCTAAAGTCTGTCACCTTGGAAAAACTTGAGAAGATGCAACAGGAAACACAGGAAATGGTTCGAAAACAGGAAATGGCACTAAGGGAGCAGATGCAACAGGAGCAGCCAGCACCTTAGTATGGCGATAGGTTAGATGTTGCAGTCACTCTACACACAGTAGCAATGAACAGTCTCCTGACATCACACATCCTAATATCTTTACATATCGCTGTAGCGCATACAGAATTAATAAAAGTACAATTTCCATATTttctcaatgtatttaaaataaagtcctTCCTTTCAGGCCCCCTTATAAACCAGGTTATTGTAGTTTTCCAACAAAATCCTAATTGATTCCTTTTGTAGGGGAGGTTAAGGTCCTAGTGCAGACTCAATGCAGGTGCGACTCTGGACTGTTACTATCCTTGAATTCAGCAACTGACAACATTATTCCATTGCTTTGATCTTGTCTTTTCAAAgtttatgaaaattaaaatgtacaaagtgTGTTCTAGCAATTAAGATACATTCCAAAATGCCTAACATGCTTTTCTTtccaaaacataatttattcatgTGCACCATGTTTTGTGTGCCATCAGTTGTCATGTCATTCAATGTTGTAATACTTCTGTATTGCTGGATCTCAAGTttgactttaaatgtaattagtagcttattcaaattaaatatttataccaAACATTTGTGGCACTTTCATttataggtttaaaaaaaaaaaaaactgcatgaaAAATAATCCATAT
>TU178596
tgtttaatgtGGTCGAATGGTTACGTCATTACGGCCTGACGTCGTTGCTACGTAAGCGGATTTGGCGTCTGTCTAGCTGTGGCCGCTGATCcagACAGCCGTCAAACATGCCTGAAGTGAAGTCTATATTCAGAGAAGTTCTCCCCAAACAAGGGCAATTATCCATGGAGGATGTACCTACCATGGTATTGTGTAAACCAAAGTTACTGCCCCTAAAGTCTGTCACCTTGGAAAAACTTGAGAAGATGCAACAGGAAACACAGGAAATGGTTCGAAAACAGGAAATGGCACTAAGGGAGCAGATGCAACAGGAGCAGCCAGCACCTTAGTATGGCGATAGGTTAGATGTTGCAGTCACTCTACACACAGTAGCAATGAACAGTCTCCTGACATCACACATCCTAATATCTTTACATATCGCTGTAGCGCATACAGAATTAATAAAAGTACAATTTCCATATTttctcaatgtatttaaaataaagtcctTCCTTTCAGGCCCCCTTATAAACCAGGTTATTGTAGTTTTCCAACAAAATCCTAATTGATTCCTTTTGTAGGGGAGGTTAAGGTCCTAGTGCAGACTCAATGCAGGTGCGACTCTGGACTGTTACTATCCTTGAATTCAGCAACTGACAACATTATTCCATTGCTTTGATCTTGTCTTTTCAAAgtttatgaaaattaaaatgtacaaagtgTGTTCTAGCAATTAAGATACATTCCAAAATGCCTAACATGCTTTTCTTtccaaaacataatttattcatgTGCACCATGTTTTGTGTGCCATCAGTTGTCATGTCATTCAATGTTGTAATACTTCTGTATTGCTGGATCTCAAGTttgactttaaatgtaattagtagcttattcaaatta
>TU178597
tgtttaatgtGGTCGAATGGTTACGTCATTACGGCCTGACGTCGTTGCTACGTAAGCGGATTTGGCGTCTGTCTAGCTGTGGCCGCTGATCcagCCGTCAAACATGCCTGAAGTGAAGTCTATATTCAGAGAAGTTCTCCCCAAACAAGGGCAATTATCCATGGAGGATGTACCTACCATGGTATTGTGTAAACCAAAGTTACTGCCCCTAAAGTCTGTCACCTTGGAAAAACTTGAGAAGATGCAACAGGAAACACAGGAAATGGTTCGAAAACAGGAAATGGCACTAAGGGAGCAGATGCAACAGGAGCAGCCAGCACCTTAGTATGGCGATAGGTTAGATGTTGCAGTCACTCTACACACAGTAGCAATGAACAGTCTCCTGACATCACACATCCTAATATCTTTACATATCGCTGTAGCGCATACAGAATTAATAAAAGTACAATTTCCATATTttctcaatgtatttaaaataaagtcctTCCTTTCAGGCCCCCTTATAAACCAGGTTATTGTAGTTTTCCAACAAAATCCTAATTGATTCCTTTTGTAGGGGAGGTTAAGGTCCTAGTGCAGACTCAATGCAGGTGCGACTCTGGACTGTTACTATCCTTGAATTCAGCAACTGACAACATTATTCCATTGCTTTGATCTTGTCTTTTCAAAgtttatgaaaattaaaatgtacaaagtgTGTTCTAGCAATTAAGATACATTCCAAAATGCCTAACATGCTTTTCTTtccaaaacataatttattcatgTGCACCATGTTTTGTGTGCCATCAGTTGTCATGTCATTCAATGTTGTAATACTTCTGTATTGCTGGATCTCAAGTttgactttaaatgtaattagtagcttattcaaatta

Function

symbol description
bbip1 Acts upstream of or within Kupffer's vesicle development and melanosome transport. Predicted to be located in cilium and cytoplasm. Predicted to be part of BBSome. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 18. Orthologous to human BBIP1 (BBSome interacting protein 1).

NR:

description
BBSome-interacting protein 1

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0034464 BBSome cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003291 True 1014 mRNA 0.38 3 17721244 17725381
TU178596 False 882 lncRNA 0.39 3 17721297 17725302
TU178597 False 878 lncRNA 0.39 3 17721297 17725302

Neighbor

gene id symbol gene type direction distance location
AMCG00003284 NA coding upstream 318494 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 366365 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 410023 17306500 ~ 17311221 (+)
AMCG00003265 NA coding upstream 780137 16933521 ~ 16941107 (+)
AMCG00003264 aldh18a1,LOC107081732 coding upstream 790389 16914965 ~ 16930855 (+)
AMCG00003295 smndc1 coding downstream 166842 17892223 ~ 17896705 (+)
AMCG00003301 NA coding downstream 315394 18040775 ~ 18059015 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding downstream 336055 18061436 ~ 18073141 (+)
AMCG00003305 NA coding downstream 580665 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 714126 18439507 ~ 18493790 (+)
G141966 NA non-coding upstream 8380 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 17784 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 203323 17517720 ~ 17517921 (+)
G141885 NA non-coding upstream 686002 17032425 ~ 17035242 (+)
G141829 NA non-coding upstream 919932 16798959 ~ 16801312 (+)
G141999 smc3,LOC107685530 non-coding downstream 113330 17838711 ~ 17840604 (+)
G142014 NA non-coding downstream 214480 17939861 ~ 18000435 (+)
G142062 NA non-coding downstream 769543 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 1031532 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 1110159 18835540 ~ 18840753 (+)
G141962 NA other upstream 42722 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1162038 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1220250 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3115696 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 3421251 14283850 ~ 14299993 (+)
G142078 NA other downstream 863193 18588574 ~ 18692204 (+)
G142172 NA other downstream 1810312 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1893500 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1925795 19651176 ~ 19658477 (+)

Expression


Co-expression Network