AMCG00003292 (shoc2)


Basic Information

Item Value
gene id AMCG00003292
gene name shoc2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17688413 ~ 17702982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003292
ATGAGTAGTACTTTAGGAAAAGACAAAGACTCAAAGGAAAAGGACCCCAAAGGTCCTATGggaaaggaaagggaaaaggAGGCCAAACCCTTGAGCAGCTTCAGTAAGGATGGCAAGGAAACCAAGACCAAAGGGAAGGATGCCAAAGAAGGAAAGAAGGACAACAGTGCAGCACTGCCTGCAGTGGCCTTTTCTGTTGACAACACGATAAAACGGCCAAACCCGGCACAAGGGACTCGCAAGAAAACCAATGCCGAGGTGATCAAAGAGCTGAATAAGTGCCGGGAGGAGAACTCCATGCGTTTGGACTTGTCAAAGAGGTCCATACACATACTTCCCACAAACATCAAGGAGTTGAATCAGTTGGTAGAACTTTACCTGTACAGCAACAAGCTGCAGTGTCTGCCCGCCGAGGTGGGCAGCCTGGCAGGCTTGGTGACTCTGGCCCTGAGTGagaactccctcaccagcttGCCTGACTCTCTCGACAACTTGAAGAAACTGCGAATGTTGGACCTCCGGCATAACAAACTGAGGGAGATCCCACCAGTGGTCTACAGGCTGACGTCCCTCACCACCCTTTATTTGCGCTTTAACCGCATCACTACGTTATGTAACCTCATCACACTGGACATAGCTCACAATCAGCTCGAACACCTTCCGAAAGAGATTGGAAATTGCACACAGATCACTAACCTAGATTTACAGCACAACGAGCTTTTGGACCTTCCTGAAACTATAGGTAATCTGTCGAGCATAAATCGCCTGGGTCTGCGATAcaacaggctgtcagcaatCCCCAAATCATTAGCAAAGTGCCGAGAACTGGAAGAGCTCAACCTGGAGAACAACAACATCTCTGTGCTACCAGAGGGTCTTCTGTCTAGTCTGGTGAACCTGACAAGTTTAACACTGGCCAGAAACTGCTTCCAGTCCTACCCTGTGGGCGGCCCCTCACAGTTCTCAACCATCTACGCCCTGAACATGGAACACAACCGCATTAATAAGATCCCCTTCGGCATCTTCTCCAGGGCTAAAGACAATCAGCTGACTTCCCTCCCACTGGACTTTGGAACCTGGACCAGTATGGTTGAGCTGAACCTGGCCACCAACCAACTCACAAAGATTCCCGAGGACGTGTGTGGTCTCGTCTCTCTCGAGGTTCTGATCCTGTCAAACAATCTGCTAAAGAAACTGCCCCATGGCATCGGCAATCTGCGCAAACTGAGAGAGTTAGACCTGGAGGAGAACAAGTTGGAATCTCTGCCCAATGAAATTGCTTATCTTAAAGATTTACAGAAACTGGTCTTGACCAATAATCAACTGAGCACCTTGCCCAGGGGGATCGGTCACCTCACCAACCTGACGCACCTGGGCCTGGGAGAGAACCTCCTGCAGCACCTCCCTGAGGAGATAGGTACACTGGAGAACCTGGAGGAGCTGTATCTCAATGACAACCCCAACCTTCACAGCCTTCCCTTCGAGTTGGCCCTGTGCAGCAAGCTGTCAATCATGAGCATCGAGAACTGTCCCCTCAGTCACCTGCCACCTCAGATTGTCGCTGGGGGCCCATCCTTCATCATTCAGTTCCTGAAGATGCAGGGTCCGTACCGTGCCATGGTCTGAACGCCCAATCCTCTGTGTCATACACTGTAAAAACtagaaaagaaatgcattattgttGTCATGAATATCTATCTGAGAAAAGGTAATTTTAATAAGACTGCATTACATGTTTCTGCTAATAGAGGAATCATAGCCATTtagagtttttttctttttcttttttttaaatcatgaagAATCAAGAGGAATTGCTTGTGTAGGCTTTCTTTGCCAGAAATTAtagatgtatattaaattaccAACTGTTGAATGGCagttttctttcaatttaaaaaccgTATTGCCAACAAAGTTTCAGTAATTAAACCTAATGGATTACAGATGGCTGTTATGAGTAGAAAAGaaactgtacaaaaaacaaattgtatatatattttttattgatttcctttttagggggggggggcttttaACTGCTGCCATAACCCTTGTGATTCCACTGTCCCCAGACTAAGTGTatgattattgtgttttatggtGCAGATTATTTACCTAttaggaaagaaacaaacatgcgCTGTtgctatttaatttgtaaagttTTAAATGCAGGATCTCAATTTCAGTGCCTATCAAGGGAGAAAAACGCTGATGTGGATAGTTAAGTAAGCCTTGTACCCATCATCAGCTTTTAAACTTCTTACAGAGCTATGAGTTTCCCTTCTCTTTCAGccattggttttatttgtttgctgtacttttattatttttagaaaaatctCCCCTAAAACAAGTAATCTGATTCAAAAGTTAAAATCAGTATCGAAGTTGCCTACATCCACTGATATTAATAGAAAAATccgatttactttaaaaaataataatttaaatgattagAATCATTCTTAATTGTTCACATCCATTCTTTTCAGTTGTTGTGATGGGAGTGTCACCAAAACATTCAGTGGGATGTGTTTGCAATTCAGCCTGATTTTACAGATCTATAATATATCAGGCACATAACCAAATCATACTGATTGGTTACAAAGTGAATGGGTGGTGGGGTGCGTTCATTGCCCTCTTGAAGTTCGTTTTAAATCTTAAGGGTTTGGCTATATTACTGTTGTCATAGTAACAAAATGAAACGGCGCATATCACCCTAAGGAACCAAATCACAACGTTCCTTGGATTCCTATTAAAGTATGGCAAATGCTATTTGTAAGGTTATGGCCTTTCCAGAGAGACATTAAACAGAGCACAGTTTATTCTGagctttctattttatttaaactaccATGTTGTGTTATAACCCTTTACTTTTACGAAAAAGTGTTCTACTTGTGCATCACCAGATCTGAAAGCTGAGGTGTGTCGAGCATGCCATCTTTACCCTTCCCCATCATGCTGCTGTTTTGTAATGCACTTTTTTTAATAGTTCTGGCATCAGCCTTTAAATGATTCTATACTGATTGGTGGAAATTATCCCTTTACTGGTTATACATGGAATTGgggcattttgtttattttaacatgggatttatgttcagttttcttttaataagcAATTTATATTGAACTTATTTTTGCAAGTGTTTATAGCTATTTTAATATATCACATAAATCCTTCAGCTGCCTCaactaaacaaatgttaatGCTGGAATGATATATATTCCCTTGGATAAGCTTGGGGTGAAGGTTTTGTTCAATATGGCTGAACTCCATACACTTCAACTTTTAAAGTCATAAAAAGGTTTGGTAATGCATGCTGGAACAGAACTGAAATACCCATATCAATCTGTAGACAATAGACAACACGTATAATGAATTTAAGTATTGCAATTGAAAATCACACTATTGTTTAAGCAAAAAGCCAAAATCAGctaattattggtattttttgtattgcgTATGATGCATTATGATTAGTATTATGTCAAAGTGACTGTACATAAACCCAACTTTAGtttctaaacttttttttccccctcatgtaaatgtataatacagCTATGAATGGATGACTAATTCTTTCATGTCATTTTGATCAttgtttactttcttttttacatGTACTTGTAAATGGCAGCAGCTTATGCTGGGTTTTTGTGCGGAAAAGGTTTACGACAGCGCTTCATCTACAGAGGTCATGTGTGACGAGGTGAGAGCACACCCCTTGTTGGTATGGGACATATATTGCTGCTTATTTGTACCAACCAGAACTCATTGCTGCTTTATGAACTCTTGAACATATGCTGTAAGAGGTGAAGGCAAATCCCGATGCAGACTCATTTTGTAGTCTGGTCACTAAAGCCATTGTCTGATGCATGGTCAGGCTCAGTGGCTGTAACCGATCAAATGATTTGGACAGGA

Function

symbol description
shoc2 Predicted to enable protein phosphatase 1 binding activity. Predicted to be involved in positive regulation of Ras protein signal transduction and signal transduction. Predicted to be located in cytoplasm and nucleus. Predicted to be part of protein phosphatase type 1 complex. Used to study Noonan syndrome-like disorder with loose anagen hair and RASopathy. Human ortholog(s) of this gene implicated in Noonan syndrome-like disorder with loose anagen hair 1. Orthologous to human SHOC2 (SHOC2 leucine rich repeat scaffold protein).

NR:

description
PREDICTED: leucine-rich repeat protein SHOC-2

GO:

id name namespace
GO:0046579 positive regulation of Ras protein signal transduction biological_process
GO:0000164 protein phosphatase type 1 complex cellular_component

KEGG:

id description
K19613 SHOC2, SUR8; leucine-rich repeat protein SHOC2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003292 True 3937 mRNA 0.41 8 17688413 17702982

Neighbor

gene id symbol gene type direction distance location
AMCG00003290 NA coding downstream 10567 17676623 ~ 17677846 (-)
AMCG00003289 NA coding downstream 230908 17457203 ~ 17457505 (-)
AMCG00003288 NA coding downstream 231227 17456513 ~ 17457186 (-)
AMCG00003285 NA coding downstream 313259 17363794 ~ 17375154 (-)
AMCG00003286 tectb,LOC107755437 coding downstream 327596 17357003 ~ 17360817 (-)
AMCG00003294 NA coding upstream 23078 17726060 ~ 17742906 (-)
AMCG00003293 NA coding upstream 44307 17747289 ~ 17771350 (-)
AMCG00003297 NA coding upstream 114557 17817539 ~ 17823740 (-)
AMCG00003298 smc3 coding upstream 122952 17825934 ~ 17845238 (-)
AMCG00003296 NA coding upstream 146798 17849780 ~ 17856520 (-)
G141879 LOC107575789 non-coding downstream 750367 16937634 ~ 16938046 (-)
G141871 aldh18a1,LOC107684039 non-coding downstream 768913 16914938 ~ 16919500 (-)
G141795 NA non-coding downstream 1032246 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 1189972 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 1627375 16008063 ~ 16061038 (-)
G142060 NA non-coding upstream 584021 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 601649 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 603380 18306362 ~ 18306683 (-)
G142090 NA non-coding upstream 1132558 18835540 ~ 18837485 (-)
G142176 NA non-coding upstream 1845659 19548641 ~ 19548932 (-)
G141826 NA other downstream 939982 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 2547594 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 3013993 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 4258089 13407272 ~ 13430324 (-)
G141004 NA other downstream 4808992 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 1840655 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 2099097 19802079 ~ 19876762 (-)

Expression


Co-expression Network