AMCG00003293


Basic Information

Item Value
gene id AMCG00003293
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17747289 ~ 17771350 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003293
ATGCAGTCTGGTGCCGCTTCATCGGGGCATCAGGAAAAGAAGCCCTTCCCCATTGGTAGTCAGCTTAGCGGGGGAGGCCATAACCCCCTGCTCTTGTCCCCAGCCAGCCTACAGCTTGctcagcttcaagcacagctcaCTCTGCATCGACTGAAATTGGCCCAGACGGCTGTAAACAGCAACACGGCAGCAGCTGCCACCGTTCTGAATCAGGTTCTCTCCAAGGTGGCTATGTCTCAGCCCTTGTTTAACCAGATAACTTCATCCATGGTCAGCACTCCTCACAACCACGGTGGTGGGACGCAGCTGTGCTCCGGGATGTCAGTGGGCAGGTTCGCCTCCAGCGGACTGCCCTTCCCACATCAGAACTCAGCTCTGGGGCCTCTAGTGAGTGGAGGCCTAGGATGCAGCGGCAACCTGCAGAATCAAACACCCGGTGCCGTCGGACTGCACCCTTACGGAGGTGCTTTGTCTCAAGTGTCTGGCCAGCACACCTCAGGATACGGAAATAAAATCAGCCTATCCACTAATACCATGTTCCCTTCGGACACTGACAGGCGCGGCCAGTATGGGTTCCTGAGTGGCCCGCCCAACACAGCAGGGAAAACCAGTGAGGGGCCCTTCTTGCCTTCTGGTGCTCAGTCACAGGCAGGGAGCCAGGGTGGGTTTCAAAGAGACTTCTATGGATCTGGCACTCAGGGGCCACAGGGCATGGGGAAACAATCTACCTTCTCTGGAGAGCAGAACATGAACGCCTTTCAACCAGGTGTCCACAATGACCAGTGGCAAAGCCAGGTCAGGTTCCCCAACCCCACTAAGCTGGAGGCATCTAATCAAGGGAGTGCGTGGGTGACCTCCAGCCAGCCATTCCACATGAGGGGCGAGCTGTACAACCCAGAGGAGCCCACCCCTGACTCCAAGTTCAACTCCACCACCGGGACGCCTTATAGCAGCAACACTCAGGGGTTTGTGGGATACCAGCAGCTGCAGCTGGGAGAGGACACCCCCTCTGGAGGCCCCATGCCTCTCCAGCCTCACCAGGTCAACGATTTCCAAGCAGTGACTCCGGCACACCTGCCACACCAATGCACCATCTGTGAAAAGAAGGTCTTTAATCTAAAGGACTGGGACCAGCATGTGAAAGGGAAGCTTCACCTCCAGAATCGAGCTCTTTTCTCAGAAGGCTGCACCAATGAGATCACAGCCCTTGTCAGGAATTGGATTTTCATCACCTCAGtcagggtcaaagGAGAGGAGCAGGGGTTGGGGGTGGTCATGTCACAGATCGGCAGGGATTTCTATACTTGGCGATCCGAGGGGATTAGCGACAAAGGGGGCTGGGTGTCGGCTGGAGTCCGAAAGCCTTCTGTTTTTAAGTTCCCTCAGAGGAAGTCCCCCCCAGGCCGAGTTGTGCATATCTGCAATCTCCCAGAAGGCAGCTGCACTGAGAATGATGTCATCAACCTAGGCCTTCCCTTCGGGAAAGTCACCAACTACATCCTCATGCGGTCCACTCACCAGGCCTTTTTGGAAATGGCTTATGTTGAAGCAGCTCAGGCAATGGTGCAATACTACCAACAGACTCCCGCCACAATTAATGATCAAAAGCTGCTGATCAGAATGTCAAAACGTTACAAGGAGTTGCAGCTGAAGaaaCCAGGAAAGGATGTAGATACTATTATCCAAGATATCAACTCTCAGAGGGAAAGAGATGGGATGCAGGAAGTAGACCGATACCCCCCAGAACGCACCAGGTCCAGGAGCCCCATTAGCCGCTCCCTGAGCCCGCGCTCCCACAGCCCCAGCTTTACCTCCTGTAGCTCCACGCACAGCCCCCTGGGACCCTCACGGGCAGAGTGGAGCAACGGCATGGGTGAGAGAAGGGCATCCTGGGACTGGTCCCCTCACACTcgcagggaggaggagagggatgAGGCCTGCTGGAGGAACGGGGACGAGGAAAGGCAGGACAGCTGGATACAGGACAGGAGGAAGCCCTACCTGAAGATGGTGGACAGGGTGAGCCCCAGGTCTGCAGAGGAGAGGGGGGTAGCGCTGAGGGGGAGCAGGGAGAGGTACACACGAAGCAGCCCCCAGAACCCGTCCTACTCTTTGTACCGCTGCAAAGAGGACGACTTCTGCAAGAAGGAGCTCAAACACAAGTCTGACCGCCCCCCCAGGCCGCCGCACCAGCGCCACGAAGCCAAGACGAAGAAAAGGGATCCGGAGGAACATCACAGGCCGAGATACTCGGATGGCGAAACACAGGAGGACACCAGCGGAGCCGCCAGGACGTCAGAGGACAGGAGGCAGGCCAGCACAGAGAGGGGGCGGAATAAGAAGCCACACAGGAAGTTGGCCACAGAGAAGGAGGAACAAGTATCAGAGAGCCAGgtAGAGCAGCAGCTACAGGGTCAGGCATTGTCCCCTAACCGGAAAGGCAAGCGAACTGATGAAGCAGATGAGGATACAGGCAAAGAAAATCAGaCGGAGGATGGGGAGAGCGGGAACGAGACGGAGGGAGAGTCGTGGTACCCCCGCAACATGGAGGAGCTGGTGACGGTGGACGAGGTGGGTGAGGAGGAGGATTACATCATTGAACCCGACCTCCCCGAACTGCAGGAGGCCGTCGAGGCTGAGTATGAGTCCAGTGAGGCATCCAAGACTGCAGCCGGTGAGAAAGCCACCCAGGCCCACAGTGACGTATGTCAGGTGGCGAAGGGCACTGAGATAGAAGTGGAGCTGACTCCAGAGGAGCACACAGCTGTCAGGTCTTCCTCGGTGGCCTCCAACACAAGCCCTAAAGACCCAGCTCCCAGCTCACCTCCTCACGAGGAAACAACAGCCCGGCCCGCCTCCCACCTTAGGGACTTCCCCAGCCAGGAGTTCCAGGCGGTGTTTGCGGAGGTCTGCTCCTGCACAGATGAGGGAGGGGCAGGAGGGAACAGCCCCCATCCTGAGGAGGCCCGACGGGGAGGTCGGGACCTGGGTGATGGCAGCAAGCCTCTAGATATTCTTAGTAGCTGTGAGACGGGGAAGTTTGCGATGATCGCGAAAGCTGTCGCCCAAGAAATGGAAAGCGAAGAGGAACGCTTGAGAGAAGCACAGACGAAAGACACCCAGCTTAAGTCTCCCAGACACTCTGAAGCAGAAACCAGAAAGGCCCCGTCACCAGCCCTCTGGGATCAAGAGAATGTGTTTAGTGAGCACAGCATCCCTTTAGGGGTGGAGTTTGTTGTGCCCAGGAGTGGGTTTTACTGCAAGCTGTGTGGATTGTTCTACACCAGTGAGGAAACAGCTAAAACATCCCATTGTCGGAGCAGCGTGCACTACAGGAATCTCCAGAAATATCTGTCGCAGTTAGCTGAGGAGAGcttgcacagcacacacaacaacacCACAAGCACCGAGGAGCCGGGGATTGTCCCACTGTTTGAAGGAGTGAACAAACCCTGTTGATGATGGATTGAGCTGTAAGCCAGTTACTGGAAACCCTGGAAGCCTTAAAAGCAGATGGATGTAAGCCTGAAAAATATGAGGAGCTAATCCGGCTCTCCATACAGAGTGCAGATGAATTCTGGTAAAAGATCCTATTAAAAGGGACAACTTCTGTAAAATCTCTCTGAAGcttgaactgaaatgtaactTTCAAATACAGTATTCTTTATCCAAATGTTAacctgtaatatatattttattgttacataGGCAGGTCAtcaaacaaatatcaaaatgCATCTAGTGACTTTGATGCTACCCTCAGGAAGTTTTGTAACGGTTTCAGTAGCACTAGAGATTTTGCCGCATGTGGTCTGTAGTACACTCTAACCTGGCTGCATTTACCTGCTGCCGTTTAACAACACTTTCCGAGTTCGAAACTGCAGAACTGAGACCATACAATATTCCATTCTCCAGAGAACtgtttcttattcattttcagGAATTTACATGTTTGCACAATGAACAttctacttttgtttttgttttgtttgtctttcttttttgaaaCTGTTCTGCAGTTTCTGTTACATTACAATCACGAAGACCTGCAGGGAATTATACAAAGTGTGGATTAATAGAGGTGTATGAGAATAATCCACCTCTGACCACAGGCCAAACGTAGCAGCTAGCAGCAAGTGTGTATAAACTGAATTTGTACTAATGTCGCTTCTTGTCTTCCAAAAAGTATAAGGAAAATGATCAAGCAATACAGTTGATCAGTGAGCGCAAAGGAGAACTAGAATCGCCAAAGCAAGCCTGTTGTGTCTTCTTAAATACTGTAATAACCCAGAGACCTGCAGCTTAGTGATGAGAAATAGGGACAGAAAAATGCATGGTCTAAATGcatgggtactccaggaccggtttgaaaactaCTGGTctaatggaaacaaaatatttaatcaaaatattgtgttttctatttttaagttaattttctaatattttgttttatttatttttacatgttttgtatgCACTTCTTGGGTGCCATAAGAAAGGCTTTGCTTAATAATAGCATTTCTGTAATGATAAGTGATTGTATCTCACCTTTGTTATTATTGCACAATCCCTATTTATATGAGTCTCAGTACGTTGAACCACATGTATTTGCCTCAGGAATCAATCAAAGGATGGTTAACAAAAATGTCAACTTTCTGAAATGATGTACTCAAgctgaaaatattttgagataaaaAATATGGACTATTATGCTCTGTATCTCATAATAATTTGAAGTATTCTGTAATTGAAGAAAACTAAGTATATTTTGAAGTATATTGTCTATGTAATGAACTTAATATTTAGTGATGAGAGTCACAAGattctgaaacaaataaatcctAATTTGACTGACTATTGTATCCATACACAACCcatgacaattaaaatacacatttaattgtgtttaaccATTATATTGACCCATcccatcaaatgtttttttttttttttttggccttaATCTCTCTCCTCACTGTTTTAACCCTGGGCTTTGGAGACGGCTCTAAATGTTTGTTCTTCTGATTTCTTAAAATGATAATAGAATGGTATTTAGATGCCACATGTCATCATCTTTGTCTAGTCATTTTGAACATCTGTTGTCAGGAAGGATAGTAAAATAGCTAATCATGTTAAACTTAAGACGGTGATCACAATCCATCAATGGTTTTGATGTGGTTAATTTCTCAGTTTAACAAGGTAAATTTGGAAGAATTTCAACCTTCAGCTGAGCTCTGGCTTTAATGTCCCAAGATCCAGTAGAATACACACCCCGGGGCTGCAAACAGCCAAGCCCAACTCATGTATTATGACACTTATGTCTGCTTTTGTTGGCTCATCTGTGAATCTCTGTCTGTAGCACAGAAGGGGCTTCTTACCAtaaatgacagttttttttcaaatcattgAACAATGTGAGAGAGATTGATTTATCCCAAAACTTcgtattttaaattttattttgaataatgaaaCATATTCAGGgaataatcatatatatataactggtGAAATACTTGAACTGGACCATTTGTGTGAttatatattgtgaaatataaagGAGTTTTGAATAGTGGGGGTTTTTTTGGAGAGGAGTGAGCAGTAGTTGGGGGCGTGAGGGGGTGTAAAAACTGGATTtagatttttcaattttctgtaCTGTGAATTCTATTGCACCAGGAACTATCTGTGGATTTTTAATTCTCC

Function

GO: NA

KEGG:

id description
K24052 RBM20; RNA-binding protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003293 True 5709 mRNA 0.48 16 17747289 17771350

Neighbor

gene id symbol gene type direction distance location
AMCG00003294 NA coding downstream 4383 17726060 ~ 17742906 (-)
AMCG00003292 shoc2 coding downstream 44307 17688413 ~ 17702982 (-)
AMCG00003290 NA coding downstream 69443 17676623 ~ 17677846 (-)
AMCG00003289 NA coding downstream 289784 17457203 ~ 17457505 (-)
AMCG00003288 NA coding downstream 290103 17456513 ~ 17457186 (-)
AMCG00003297 NA coding upstream 46189 17817539 ~ 17823740 (-)
AMCG00003298 smc3 coding upstream 54584 17825934 ~ 17845238 (-)
AMCG00003296 NA coding upstream 78430 17849780 ~ 17856520 (-)
AMCG00003299 LOC104922112,LOC107390704 coding upstream 131951 17903301 ~ 17906408 (-)
AMCG00003300 NA coding upstream 153562 17924912 ~ 17926983 (-)
G141879 LOC107575789 non-coding downstream 809243 16937634 ~ 16938046 (-)
G141871 aldh18a1,LOC107684039 non-coding downstream 827789 16914938 ~ 16919500 (-)
G141795 NA non-coding downstream 1091122 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 1248848 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 1686251 16008063 ~ 16061038 (-)
G142060 NA non-coding upstream 515653 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 533281 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 535012 18306362 ~ 18306683 (-)
G142090 NA non-coding upstream 1064190 18835540 ~ 18837485 (-)
G142176 NA non-coding upstream 1777291 19548641 ~ 19548932 (-)
G141826 NA other downstream 998858 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 2606470 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 3072869 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 4316965 13407272 ~ 13430324 (-)
G141004 NA other downstream 4867868 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 1772287 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 2030729 19802079 ~ 19876762 (-)

Expression


Co-expression Network