AMCG00003294


Basic Information

Item Value
gene id AMCG00003294
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17726060 ~ 17742906 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003294
agaaaacaaaaacaacacacaagtTAAACTTGCAGTTGGGATCAGGGATTGAAGGGACGTCAGGTAACGAGAAGTTTGTCTGCATTGCACGCCGTTTGCAGATCACTTGTTAAAACATGGCAACTGAATGCGAGGCATGGCTTAATGCTAACCCTGTTGAGGCCGAGGCTCTCCGCGATTCCTTCTTGTCCGGCGATGACGAGAAAGTCGTGTCCACCAAGATCGACAATGAGATCAATGGAAACTGGATTGCTTCCACCTCCACCCTCCACGAGGCGCGCGTCAAGGCCAAGGCCAAGAGGCGGCTGAGGAAGAACTCCTCCCGAGACTCCGGCCGAGGAGACTCCCTGAGCGACAATGGGGAGAGCGTCCGAGGCCCGCAGGCCACGCCCACCAGCCCCAAGAGCAAACTGCTGGACAGGAAGTCCCGATCAGGAAAGGGGAGGGGCTTGCCAAAGAAAGGTGGTGCTGGAGGTAAAGGTGTGTGGGGCCCTCCTGGCGAGGTGTATGATCTTGAAGAAGTGGATGTCAAAGACCCCAATTATGATGATGATCAGGAAAGCTGCGTTTATGAAACAGTGGTCCTGCCCCTGGATGAAGGGGACTTTGAGAAGACCGTGACTCCCATTGAGCTGCTCAGTGAGCTTAACCTGGGCGATATGAAGAGTGGGGTTCCCATGCTGGCAGTTGCCCTGGCCCTGGAGGCGAAAGCCAGCCACAGGGAGCTGACCTCCCGGCTGCTGACCGACCTGTGTGGGAGGGTTCTGAGCCCTGACGATGTGGAGAAGTCTTTTGATAAGCTGCTGAGGGATCTGCCAGATCTGGTCCTGGACACCCCTGGGGCTCCTCAGCTTGTCGGTCAGTTTATTGCTCGAGCTGTTCGAGATCAGATCCTGTCCAGAAACTATATCGAGAGCTACAAAGGGAAAGTGGACTGTGAACATGCCAGAGCGGCTCTGGACAGGGCAGCGGTGCTGTTGAAAATGAGAGCAGGGATGCGCATGGACAGTGTCTGGGGGGCAGGAGGGGGGCAGAGGCCAGTCAAACAGCTCATCAGAGAGGTCAACCTACTGCTGAAGGAGTACCTGCTGTCTGGGGAGGTAGTGGAAGCAGAGAGGTGTCTGAAGGAACTAGAAGTACCGCACTTTCACCATGAGTTTGTGTATGAGgCAATAGTCATGGTCTTGGAATCGAAAGGggaaactgcttttaaaatggttcTGCAGCTGCTGAAATTTCTGTGGGAGTCCTCGGTCATCACTGTAGACCAGATGAGAAGGGGATTCCAGAGAGTTTACAGCGAGATCCCGGAAATCAACATTGATGTCCCTCGAGCTTACTCTTTACTGGAGCAGTTTGTGGAGCAGAGCTTCAGTGCAGGGGTTATTGACAAAAAGCTGAGGGACCTTTGTCCTTGCCGAGGCCGTAAGCGATTTGTAAGCGAGGGAGATGGTGGACGCCTTAAACTTGAAAGCTACTGAAGGGGACCTCTGGAAGTCTTTGGGCCAGTGTATGGAATCATGAAGATGCTTTTTACACTTCATATTCTTAACGGTTTAGGTACAAAAATGATCCTTgcaactggggaaaaaaaaaataaaaaaaaatgggggggtGAAACAAAAAAGGCACTTTTGATGCTTAAGATGGAATCTGAAAATTACACCTGAAAAGTGTTTTGAAATAAGCTAACTCTGAAAGTGCCAGACCTTCGATGATGTATTCATTCCATGTTTTGTATTGCAATTTCACTGCCACTCCTTTTTTCCCCTGACAGCAGTGTTTATATGTAAGAACCACTGGTTTGTGTAAGAAGCTTTATATCGGGGGTGTGGTGGGGAAATGTTTTGCTGTATGGAACAGCTACCCCCTCTGTCGGCTGCTATTGTTCATATGCTGtgcttatcttttttttttttttttttttttcttaaagttaaaaatgacattcagttgaaatggaacaaaaaaacaatccaggGCAAAGTAAACAATTAGGGaaaatttcacaaaatggtGTCTGGaacatctatttttatatataaaaacactggAAAGTGAAATGTACCCAGTCTTGCTCAGTGTTAATGTTTTGTGGGgggatacaaataaaaaaataaaaataaaaaacctgcaaagccttaca

Function

GO: NA

KEGG:

id description
K16865 PDCD4; programmed cell death protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003294 True 2146 mRNA 0.48 12 17726060 17742906

Neighbor

gene id symbol gene type direction distance location
AMCG00003292 shoc2 coding downstream 23078 17688413 ~ 17702982 (-)
AMCG00003290 NA coding downstream 48214 17676623 ~ 17677846 (-)
AMCG00003289 NA coding downstream 268555 17457203 ~ 17457505 (-)
AMCG00003288 NA coding downstream 268874 17456513 ~ 17457186 (-)
AMCG00003285 NA coding downstream 350906 17363794 ~ 17375154 (-)
AMCG00003293 NA coding upstream 4383 17747289 ~ 17771350 (-)
AMCG00003297 NA coding upstream 74633 17817539 ~ 17823740 (-)
AMCG00003298 smc3 coding upstream 83028 17825934 ~ 17845238 (-)
AMCG00003296 NA coding upstream 106874 17849780 ~ 17856520 (-)
AMCG00003299 LOC104922112,LOC107390704 coding upstream 160395 17903301 ~ 17906408 (-)
G141879 LOC107575789 non-coding downstream 788014 16937634 ~ 16938046 (-)
G141871 aldh18a1,LOC107684039 non-coding downstream 806560 16914938 ~ 16919500 (-)
G141795 NA non-coding downstream 1069893 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 1227619 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 1665022 16008063 ~ 16061038 (-)
G142060 NA non-coding upstream 544097 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 561725 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 563456 18306362 ~ 18306683 (-)
G142090 NA non-coding upstream 1092634 18835540 ~ 18837485 (-)
G142176 NA non-coding upstream 1805735 19548641 ~ 19548932 (-)
G141826 NA other downstream 977629 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 2585241 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 3051640 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 4295736 13407272 ~ 13430324 (-)
G141004 NA other downstream 4846639 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 1800731 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 2059173 19802079 ~ 19876762 (-)

Expression


Co-expression Network