AMCG00003295 (smndc1)


Basic Information

Item Value
gene id AMCG00003295
gene name smndc1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17892223 ~ 17896705 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003295
GGGGCTCTTTGCAGATGCCATGTGACGTCAGGGTTCTGATACCGTATCCCACGGACCTCGCGAGATTTCGAGGCTGGAGGTGACGAGATTTCGTGGGGACGCATCCGGTTAGAGCCGTGTTAGCAACGACTAGGGAAGAAATAAAGACAACCTGAACCCAGACATACAAGAGACGTCTACAGCGTTACGTGTTTTAGGTATAGCCGCTTGAAACGCAGCGATGTCGGACGACCTGGTGAAACAGTTGGCCAGCTACAAGGCTCAGCTTCAGCAAGTGGAGGCCGCCTTATCAACGGATGCAGACAATGAGGATCTACTTAAACTACAGAAAGACTTACAGGAAGTCATCGAGTTAACCAAAGACCTGCTGTCGAACCAGCCATCTGTGGCCCCCACCAGCTCAGACAGCTCTGCCGTGGCCCCCCTGAACCACTATTGGGAGGTGGGGGACAACTGCATGGCTGTGTGGAGTGAGGATGGACAGATGTACGAAGCAGAGATCGAGGAGATAGATGAAGAGAATGGTACGGCTGCCATCACATTCTCGGGATATGGCAACGCAGAAGTCATACCCCTGCAGAACCTGAAGCTGGTGGAGGAAGGCAAGAAGTCGGAGGAGGACGGAGGCAAATCCAAATCCAGAAAAGAGCAAATAGCCCAGCAGAGGGAAtacaagaagaagaaagccCTGAAGAAAGCACAGAGgatgaaggagctggagcaggagcgAGAAGACCAGAAGACTAAATGGCAGCAGTTTAATAACAAAGCCTATTCAAAGAACAAGAAAGGACAGGTAAAGAGGAGTATATTTGCATCCCCAGAGAGCGTAAATGGCAAAGTTGGCGTTGGAACGTGCGGAATAGCTGATAAACCAATGACTCAGTACCAGGACACATCTAAATATAATGTGAGGCATCTCATGCCACAGTAATGAGGGAAAATGTGTGTAGTCTGACAGAAAGCATATCGGCATTAACAGTGTTCTGTATTAGAAGGATATTCACGATCAGCGCTCATCAGGTTGTGCGTCAGCCAACtcgtttcattttaaaatgtttgttggCACACTCTTAAATGTCGGctcattggaaaaaaaaaaaacgtgcttTTGGGAAtactggattttattttcagttatagGAAGAACACAAGCTAAGCAGTTTTGTAACCCATCTTCCACGCTAATATAGCAACACTGTTAAAACACCAGCTGAGTACTTTTCCTCATAAAATTGGGAATTTATTAATGGGGACATAGTATCTGTAAGTTAATGTCCCTGgtagtgttttttcttttctttttttgccccCCACGCCCTCATCTTCTCGTTCCCCCCCCTAAGTTAAGTCATGTGCCAGTAGTGCAGTTCAGTTTTATGTGAATCAAGTCAAGGTTCGTGTTCATTTGATGCATTGACTGGTTAAAAAAACCCGCAAACCACAGTATCCCCATTACATTAAGCTATTGAATTCTGTCCAGTTGTCAATAAGGTGAAGAAGAAAGAACAATGTAAAGATTGCATAGTTGTTGAAAGGATTAATAAACCATAATACTTCTAGCACTTTTACATCATGTAAATCAAGCTAACTGTTGGTTCTTTGGGTTATCGTTCTACAAGTCTTCTCAGTTCTTCAGCATATGTCAGTCACCAGAGCTGAGTGTCCAGTCTGAAACAACCTGGCTATTTTGTTGAAAAGGCTGCGAGAGATTCGTTTTTAGTTAGTGCGAGTTCAACTGGAATGCTAGTTTCAGATAgactatttttacttttgtttctctGCAAGGATAATGCAAAGTACCTGCAAAGCATATGTTAATACAATTCTTCCTATTTTTGGAGGACTGTGATTTTTATGAAATTAATGttacttttcagttttgtacatttaacttttatcaaataaatgttgaaaatgtaaa

Function

symbol description
smndc1 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in Cajal body; cytoplasm; and nuclear speck. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus. Orthologous to human SMNDC1 (survival motor neuron domain containing 1).

NR:

description
PREDICTED: survival of motor neuron-related-splicing factor 30

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12839 SMNDC1, SPF30; survival of motor neuron-related-splicing factor 30

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003295 True 1924 mRNA 0.43 6 17892223 17896705

Neighbor

gene id symbol gene type direction distance location
AMCG00003284 NA coding upstream 489473 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 537344 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 581002 17306500 ~ 17311221 (+)
AMCG00003265 NA coding upstream 951116 16933521 ~ 16941107 (+)
AMCG00003264 aldh18a1,LOC107081732 coding upstream 961368 16914965 ~ 16930855 (+)
AMCG00003301 NA coding downstream 144070 18040775 ~ 18059015 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding downstream 164731 18061436 ~ 18073141 (+)
AMCG00003305 NA coding downstream 409341 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 542802 18439507 ~ 18493790 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding downstream 1288428 19185133 ~ 19195816 (+)
G141999 smc3,LOC107685530 non-coding upstream 51619 17838711 ~ 17840604 (+)
G141966 NA non-coding upstream 179359 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 188763 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 374302 17517720 ~ 17517921 (+)
G141885 NA non-coding upstream 856981 17032425 ~ 17035242 (+)
G142014 NA non-coding downstream 43156 17939861 ~ 18000435 (+)
G142062 NA non-coding downstream 598219 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 860208 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 938835 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 945749 18842454 ~ 18842729 (+)
AMCG00003291 bbip1 other upstream 166842 17721244 ~ 17725381 (+)
G141962 NA other upstream 213701 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1333017 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1391229 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3286675 14601317 ~ 14605548 (+)
G142078 NA other downstream 691869 18588574 ~ 18692204 (+)
G142172 NA other downstream 1638988 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1722176 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1754471 19651176 ~ 19658477 (+)

Expression


Co-expression Network