AMCG00003297


Basic Information

Item Value
gene id AMCG00003297
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17817539 ~ 17823740 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003297
GCGCGATAGACAGGTGTTCAATTAGCGGGAGAGACGAGCGTAGTTAGGATAGACCTCTGATAActtgatattttttaattaacctgtCATACAGTAACATTGTATGGTCTATTagaattaagttttaaaatggaGTTTATGATGGAAATCCTAATTTTCACCTATTTTCTAATTTCTGAAACAGtagttAAAGCAAGACCTGTTCGGAGAGATTCCAGGACTTTTCAGATAAGTTTggattcaaaagaaaacaaggatGAAATCATTGAAATTAACCGAGGTTTACTAAAGGACAAAACGTCAAGCCAGATACCTCTGATGGAAGGTGATATCATATTAGAAgAAACCCGAGGTTCGGACACCCTCATCAAATGGCCCAAATCTTCTGATGGCCTTGTGCGAGTCCCATATGTCCTTTCCAAGTCTTATAGGGGTGAACAGGTTGTGTCCCTGAATGATCTGTGCCTGTCCGTTGAGGGAAACGGCACAGTGCAGCACGAGCTCCTTCATGTGCTGGGCTTCTGGCATGAACACTCCCGCAACGATCGCGACTCATTCATTGACATCATCTGGTCTAATATTTGGTTAGGGTATTCATTCAATTTTCTTACCAGAGAAACCAACAGTCTTGTACCGTATGACTATGGTTCTGTCATGCACTATTCACCGTTGGCTTTCAGTATGAACGGCAACCCAACTATTGTCCCCAAAAGTAAAAGTGCAATGATCGGACAACGGACTAAACTGAGCCGATTGGACATCCAGAAAGTGAACCTGCTCTACGAGTGTGCCAAAGTATCTGTTCCAGACAATGTATCCACACTTAAAATGGCAATAAAGACTGCTGTAAACAAATGGATCGACTCGGCCGTACCCAGTTTGGAAAATGACCGGGCTGGCTGTGCTCCAGTGGAGGCCTCTCTCTGTGATTTCGAGCACGGGCTCTCTGGATGGGAGCTGAACACTGCTGTCTGCAGATGGACTGTGCACAGGGGTCCCACGCGCTTTTTAGCCACAGGACCTGAACGCAATGTCACACTGCATCGCTGCAGTGCACAAAATGAAGGGTCTGCATCTCTTAAAGTATACAAGCGGTCATCTGCAGGAACTGAACTCCTCTGGACAGCAAAAAATGGCACAAGGTGGAGTTTTGAGAGCGTCCGCATTCTCTCTGATGTGTGTGATACCTACCAGGTTGTCTTTGAGGGAGTAACTGACAGTCCCTCAAGTGAAGCTGCTATTGATGATGTACGTGTCCAGACAGAATGTTACGTCTATAATGAGATAATTGAAGCTCCTTGTGACTGAAAATAACCTGGGCTACTCACCTGAGAGAGTGGCAAGAGAGAAAGTtgtgaatgcaaaacaaaatcaatttgcATAATAAATCGGTTACTTTCTAACTTGTTAACAAagttgtggtttatttttaaacaaattgtgaaaaatagTATAGTTGGCCAATTAGTTGTTTTTCcataaaatattgattgataCACTTCAGACCATTGAATTATATTGAGTGACCTTTCACAGTTCAGTCAATTTGGAATCTGTTTTCTCTGGGCTGAATTGGACTTCAGTGAGTTCTGAAAAGATGCAACTATACAACTATAGTGTTTTGGACTATTTATTTAAGCCAAAATCTAGAATGCATTAACATAAagaacagACTGCAGTTTGTCTTGCATAAACTAAGATGGAACAGTTGTTAAGATTGTTCAAATTCTAAGCATTACAAGCTGTAAGAATTATTGAGTTGGTGACATTTTAAGTATTCTTTCGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003297 True 1787 mRNA 0.41 11 17817539 17823740

Neighbor

gene id symbol gene type direction distance location
AMCG00003293 NA coding downstream 46189 17747289 ~ 17771350 (-)
AMCG00003294 NA coding downstream 74633 17726060 ~ 17742906 (-)
AMCG00003292 shoc2 coding downstream 114557 17688413 ~ 17702982 (-)
AMCG00003290 NA coding downstream 139693 17676623 ~ 17677846 (-)
AMCG00003289 NA coding downstream 360034 17457203 ~ 17457505 (-)
AMCG00003298 smc3 coding upstream 2194 17825934 ~ 17845238 (-)
AMCG00003296 NA coding upstream 26040 17849780 ~ 17856520 (-)
AMCG00003299 LOC104922112,LOC107390704 coding upstream 79561 17903301 ~ 17906408 (-)
AMCG00003300 NA coding upstream 101172 17924912 ~ 17926983 (-)
AMCG00003304 NA coding upstream 116131 17939871 ~ 17970610 (-)
G141879 LOC107575789 non-coding downstream 879493 16937634 ~ 16938046 (-)
G141871 aldh18a1,LOC107684039 non-coding downstream 898039 16914938 ~ 16919500 (-)
G141795 NA non-coding downstream 1161372 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 1319098 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 1756501 16008063 ~ 16061038 (-)
G142060 NA non-coding upstream 463263 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 480891 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 482622 18306362 ~ 18306683 (-)
G142090 NA non-coding upstream 1011800 18835540 ~ 18837485 (-)
G142176 NA non-coding upstream 1724901 19548641 ~ 19548932 (-)
G141826 NA other downstream 1069108 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 2676720 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 3143119 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 4387215 13407272 ~ 13430324 (-)
G141004 NA other downstream 4938118 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 1719897 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 1978339 19802079 ~ 19876762 (-)

Expression


Co-expression Network