AMCG00003301


Basic Information

Item Value
gene id AMCG00003301
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18040775 ~ 18059015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003301
ATGGCGGGAGTGATGGGATGGGTAAAGTTCGATTCCAGCCTGAATACCACCACTGTGAATTTGACAGGGATCTGTGGCTCTCTAAACCTCTCCCTGAATGAATTCCCTGTCATTTATGGTCACTTTCCCCAGCCCTGCCAGGAGTCCAACATTGGAGCAAGTGTCTTCAGCTTCAATGTCAGTCAGGTCGGCACCCCAGTCTCTGTTCCTGGTCTTTTTAGACAGAGGTCTAGTCTAGATGACCTCTCCCTTGTGTTGCAATCCTGTAATGCCACGGAAGCCTGTGCTACCATTAAGCAGTTGAAGAATGTGAAAACATGGCAGGCCAAGTTTTTCTCCTCTGTGGCAGGAGACGTGTACATTCGTCAAAATGAGAACCAAAGTGCTACATGGATTCTTTCTGATCTTGTAGCTCTCCATCCAGGTTCAAATGTGACAAGTGTCAGTGTGTTCACTTCCCAGGCCCTTGAGTCTAGTTGTGATACACGTCTAAGCCAGCTTGGCCAATCCACCTTGACATCACTGGGACAGCTAAAGGTGGGTTCCCCTCTACAACCAGTGAAGTCCCGCCTGGAGATTGCTGGACTCGCAGCCGGTGTACGCTTTATACTGATCAATCTAAGCATGGATGCATATGCATGTGCAGAGATCAGACAGGTGGAACTGAAGAAGGTCAATGCTCTCATAAGTATGAAGGGAGCTAAAGGTTCCTTCAGCTTCTCTCAGGCTTCTCCATTCGATCTCactgaaattaaagttaatCTTACTAACCTAGGAAAGAGGGTGGGGGCTTATCATGTGCATGACTTCCCCGTCCCCCAGGCGAAAACATCTGCAGAAAACCTTTGCAGCAATGATAATGTTGGTGGGCACTGGAATCCATTCAAAGTGAAAACAACAGACCCAACATATCCCAAAGTTCCAGGTGCGACCCATGACCTGTATGAGACTGGAGACCTCAGTGGAAGGCATGGGTCCTTGGCAGGCATGGACAGCTTTGAAGCAACTTTTACTGATTGGAATCTGCCTCTCTTTGGGAGGAACAGCATTGTTGGTCGCTCTGTGGTGATCCACCTCACAGATGGTTCACGACTATTGTGTGGGACTATTGGCTATCCGGGAGAAGTGGTGTCAGGAAAAGCTATCTTCAAGGGTCCTGTGGTTGGGACTATGGTGTTCAGTCAGCTGAAGAACAATCCTTATTCAGACTTAACTATGTTCCTGGATCTATCCTTTGGAAACTCATCAGCTTCTCAAACTGAAAATCATAACTGGCATGTCCACGTGTACCCCATCAGCTCTGAGACGGATTACGAGCAGATTGCGTGTGACAGCACCAAGGGGCATTTGAATCCTTTCAACATTGATACAGTGGATAGCAGTTATAACCTTAACTGTAAACCTGATAGTCCCTTTGCTTGCGAAGTGGGAGACTTTGCAGGTAAACACCAGACACTCACTCTAAACCCTGATGTCGGAAAGGTGACCAACAAGTTATTTTTCACTGACACAACTTCCTGGATGTCTGGGGTGACCTCCATACTTGGCAGATCAGTGGTGATCCATGCAGCTAACAAGACTTCATCTAGATTCACGTGTGCAAACATCACTTTAGTGCGTTTCCCTTCAGCAAGAACAGGATCCTGGTTTGGACCTGGGAAAACTAAGGGCATAGTGCAATTCTCGCAGAGTTCACCCCTGGACCTGACGGTTGTCAACGTGTCTTTGTCAGACTTACAATCAAAAGCTGGTGGTTATCATGTTCATATACTGCCTCTGAAAAACAACTCTGCAAATACAGATCCCTGTTCAAATGAGAACATTATGGGCCACTTCAATCCTTTCGCTGTTAACCAGTCCTCATCTCCAGTACCTGGAACAGGAACTGAAGACCAGTTTGAGATTGGTGATCTTAGTGGAAAATATGGACTACTGAGCAATCTGGACCGGCTTGAGCAAACCTACGTGGACAATAACTTACCCCTTTTAGGACCAAATAGCATTGTTGGACGCTCACTGGTTATACATTATGCTAATGGATCAAGAATGCAATGTGCAGACATCTTGCCCACTGAAACATCTGATGGTCACCGGATTCGAGGGAAGGCTGTTTTCAGTGGTGTTGTGAAAGGGACCATATCACTGGGTGGGCTGGTATTTCCAGATGGCAGCTCCAGTGACACTACGGTGCAGGTGGATCTGCAGGCATCCCAGCCTGGTTACAGCACCAGCTGTTCCCCAGGTCATCCCTTGAACTGTATAGTGGGGGACCTGACATCAAAACATGGCAATGCAAGTCTGAAATCCAGGCAGCTCTTCACAGACAGCAATCTTGAACTGGCTGGGGACTATACAGTTCAGTCCTTCAGCAGGTCTGAATTCCGTAACAAAGTAGCCAGCGCTCTTGACATTGAGTTCTGGAGGATCACCATCTTACCAGGAGAGCTGTCAACTGTTGCCCAGGGAAAATGCCAGCAAGTCACAATCCTTGTGTCAGGAAATGTGGATGAGTCAAAGctgaaaacactgaaagacAACGTGAAGCTGGGACAATTTCAACAGTCCGCATTGTGTTCACAAAGGGGCAATGCTGGCCAGTTTTTGAAGCCTGCAGGATATCTTCTGACAATTGCAGTGATTGCTGTCCATTTCTACTTGTTTCTGATGCTGCAGTAACTCTATACTATATGAAGCAAATGTTTCTCTCAAACTGCAAATATCTGTCTTAAATGGGAACTAGCACAGCtactaaaatgttgttttcttgcatcTTTTGTGTTGCTAATAATGCATAAGTAAGGTGTATGCAATTTCTCCAGTATGACTCATATCATATAAGCATCTTTTAACACCTCAATTTAAAACTCACCAAATAACAGCAGAATTCCAGTGGCTGAGTAGTTTTTCCGCTGTGTTTCCGCTATCCGAGAAGTCGCATCCTTGCACCCTGCAAtagaacacatttttatataatagaattaatgtggaaaaatgcaatacatCACACACATTCATGAATTGCCCCATGTAAAGATGCATACAaccaaacatttacaaatggtTGAGTTGTATGGTCCATTACATTAATCTAGTTACCTGCAACAGCATCACAAGAAAAGTTTGAGGATTTATACATCTgcaactgtaaatatatatatatcaatagcCTTATccatatacaatacatatcaTTGCACTTTATCATGCCTTATAATACAATGCTGGTATATTTGTTTAGactattaaatatacttttacatGATCCAAAAGATAGAGGTTAGTTAGCAATAGGGagtttttaaacacaatttaggacaatatttttccatttctttctgcTGGATGTTTAGAAGCGACTTTTTACCCTTCTATTATAACTGAATTCAGTGCTTAATTTACAATGCGTTCTGATATTTCTAATGATTTTGTGAGCGACAACATTCAGTATCTTATCGGCTGAGAACAGCCAACGTCAGCGTTTGACATGAGGAAGATTATTAACGTCAAGGTTCGAGAAGAAAGTTGAGGCGAAGTGGGAAAAAGACACTTGTTCAGAATCATGAATTGGAAACATGAAAACCTCAGAATAATGCATTCcttgtgtatataaacatttgtgttatttattttctgaggaCAGGTATACTCAGGTGCATTTCTATAGCTTATGAGGAATACAACATTTTGGCTGGATTTGAGAAAGGGAAATTGACGTTTTACAAAACtggcttttaaatatattttttacctaTAACATTATGTTCCCATATACCTTAATGTGCTGTATGCTTTCTATGATTTTGTTGATTGAATCATTGTGAAATTATGAACCAGGTATAGACTAACTGCAGGTTAATTTCGGTGTCATTAAACCCTATGTGCTTTCCGGAGTCAGTCTCTTGGGAGAGTCCTTTCTCCAGTGCCTTAAAAAACAGTTGCCACAGAGATAATCCCCTGCTGCACACCTGCATTAGGCCActgcaaaacaattaacaacacCTTCATTTCAGCACAAATGATACGGGGGCTGCAGTTTGCAACCATGCATTTGGAAGCAAAACAACTTCTTAAATTATACACCATTTCACATACCAATATTACCTTTTACGTTTAAGTCATAAGCATCAGGTAATGGCTGACATCCACATGCATTTTCACAGTGCCATGGAACACAATTTCCAGCCACAATGATCAACTTGTattaagttttacatttaataggTTTTTAACCGAAGCCTGTCATATTAAGGGTTTCACAGTTAATTGTGATCAATATTCTGGAAATAGTTTCTGTAGGGTGTTTTATAATCTATAAATATAGAGTTCTTAATCATTATCTAACCATGAAATGAAGATGACATCTCAcaaatgtttcagaaatgtttaaaaatggaatgtaaactgtaaactgatGAAGTACTGTACATCCAACCAAAAATCtggcaaacctttttttgtatatttgtgcaAAATGTCTAATATGGGATATCATTGGGGTCGTTATGAAATTATATGAATTGTTTCCTCTTTCATTGGTTCCTCCAGTTCATATTCCTGGAACAacttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003301 True 4568 mRNA 0.42 8 18040775 18059015

Neighbor

gene id symbol gene type direction distance location
AMCG00003295 smndc1 coding upstream 144070 17892223 ~ 17896705 (+)
AMCG00003284 NA coding upstream 638025 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 685896 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 729554 17306500 ~ 17311221 (+)
AMCG00003265 NA coding upstream 1099668 16933521 ~ 16941107 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding downstream 2421 18061436 ~ 18073141 (+)
AMCG00003305 NA coding downstream 247031 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 380492 18439507 ~ 18493790 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding downstream 1126118 19185133 ~ 19195816 (+)
AMCG00003311 LOC103355274,LOC101166281 coding downstream 1151568 19210583 ~ 19224956 (+)
G142014 NA non-coding upstream 40340 17939861 ~ 18000435 (+)
G141999 smc3,LOC107685530 non-coding upstream 200171 17838711 ~ 17840604 (+)
G141966 NA non-coding upstream 327911 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 337315 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 522854 17517720 ~ 17517921 (+)
G142062 NA non-coding downstream 435909 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 697898 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 776525 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 783439 18842454 ~ 18842729 (+)
G142146 NA non-coding downstream 1453468 19512483 ~ 19513132 (+)
AMCG00003291 bbip1 other upstream 315394 17721244 ~ 17725381 (+)
G141962 NA other upstream 362253 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1481569 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1539781 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3435227 14601317 ~ 14605548 (+)
G142078 NA other downstream 529559 18588574 ~ 18692204 (+)
G142172 NA other downstream 1476678 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1559866 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1592161 19651176 ~ 19658477 (+)

Expression


Co-expression Network