AMCG00003302 (xpnpep1,LOC106512107,LOC106589391)


Basic Information

Item Value
gene id AMCG00003302
gene name xpnpep1,LOC106512107,LOC106589391
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18061436 ~ 18073141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003302
GGAAACGTCATCGTTGAAATGGCAGCTTCCAGATACCCAAATTGATACACAACAGCAGCGTTTCAAGCATTACAGCTGGAGAAAAGCAGGTGAAAAGATGTCGCCCAGGATCTCCACTGAGCTGCTTCGGCAGCTGAGACAAGCAATGAGAAACAGCAAGTACATTACTGAGCCCATACAGGCCTACATCGTGCCATCAGGAGACGCTCACCAGAGTGAGTACATTGCACCCTGCGACTGCAGACGGGAATTTATCTGCGGATTTAATGGCTCTGCAGGTTTAAAAGAAACCCCATCCCAGGAAGACTGGCTGATTAGCGTCCTTCCTGATGGTTCCAGAGTTGGCgttgatccttggatcattgcTGCAGATCAGTGGAAAATCATGTCTAAGGCATTGACCAGAGCTGGCCATTCCTTAGTCCCAATTAAGGACAACCTCATTGATGCCATTTGGGTTGATCGGCCCGCAAGACCCGTTTCTCCACTAATCACTTTGGCATTGAATTACACTGGTATGTCCTGGCAGGATAAGATCACAGCGCTAAGGGCAAAGATGTCTGAAAGAAAAATCACCTGGTTTGTTGTCACAGCTCTGGATGAAATTGCATGGCTCTTCAACCTTCGTGGGTCTGACATCGAGTATAATCCAGTCTTCTTTGCTTACGCGGTTGTTGGAAAGAGCTCTATAAGGCTGTTCATTGATCATAGACGAATTGCAGACCTGGCTGTTAGGGACCACCTGCAGCTGGACACCCCTGGTAAGGCTGAACTGAGTGTCCAGATCTTCGCCTATGAGTCTATATTTCCCGAGCTGCAGGCCCTCTGTGCTAGTCTGGGCCACAAAGAAAAGGTGTGGATCAGCGACAAAGCCAGCTGGGCCCTGACTGATGTCATTCCAAAGACACACAGATCTCCTATTCCATACACTCCATTGTGCCTCGCCAAAGCTGTTAAGAATGAGACTGAAATAAAAGGAATGAAAATGGCCCATATCAAAGATGCTGTTGCACTTTGTGAGCTTTTTGTATGGCTGGAGAAGGAGATTCCAAAGGGCACAGTGACAGAAATATCAGCTGCTGACAAAGCTGAAGAACTCCGCAGtcaACAGAAAGATTTTGTCGGCTTGAGTTTTCCAACAATTTCAAGTGTGGGACCCAACGCTGCTATCATTCACTACAAaGATGGAACTACAGACGTGACCCGAACAATGCACTTTGGGACTCCTTCGGCTTATGAAAAGGAATGCTTCACCTATGTTCTGAAGGGACACATTGCCGTGAGCGCAGCCGTTTTTCCCAATGGAACCAGAGGCCACCTGCTAGATTCTTTTGCCCGCTCAGCACTGTGGGAGTCGGGGCTGGATTACCTTCATGGCACTGGTCATGGGGTCGGGTGTTTCCTCAATGTCCACGAGGGACCCTGTGGAATCAGCTATAAGACCTTCGCTGATGAGCCTCTTGAAGCTGGAATGATCGTCAGTGATGagCCCGGCTATTATGAAGATGGATCTTTCGGCCTTCGAATTGAAAATGTTGTACTTGTGGTTCCTGCCAAACCTAAGTACAACTACAGGAACAGAGGCAgcctgacctttgaccccatCACTCTTGTTCCCATTCAACTCAAAATGATAAATGTGGACATGCTTACCCAGAAAGAGCGGGATTGGCTGAACGAGTACCACAGGATGTGTCGAGAGGTGGTAGGGGCGGAGCTTGAGAGGCAGGGGCGGAAGGAGGCCCTTGATTGGCTGTTCCGAGAAACTCAGCCAATTGCCTGAGAGCACCTTTTGGAATGGACTCCCCAAAGGTTATTTAACGAAGTAAACCAATTGCAGAGGAAGATGCTCAGCAAAAAGACCCTTTTTCATAATGATGAAGAATTTCTTAATCTCAATCTAGTGTTGTCTGTATGCTGcacacatttcttattttataaaatacatgaagAGAATTACATGTcaacaattttaataaatgaaattaagaaaaca

Function

symbol description
xpnpep1 Predicted to enable metalloaminopeptidase activity. Predicted to act upstream of or within proteolysis. Is expressed in intestine and liver. Orthologous to human XPNPEP1 (X-prolyl aminopeptidase 1).

NR:

description
PREDICTED: xaa-Pro aminopeptidase 1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004177 aminopeptidase activity molecular_function

KEGG:

id description
K01262 pepP; Xaa-Pro aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003302 True 1996 mRNA 0.47 18 18061436 18073141

Neighbor

gene id symbol gene type direction distance location
AMCG00003301 NA coding upstream 2421 18040775 ~ 18059015 (+)
AMCG00003295 smndc1 coding upstream 164731 17892223 ~ 17896705 (+)
AMCG00003284 NA coding upstream 658686 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 706557 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 750215 17306500 ~ 17311221 (+)
AMCG00003305 NA coding downstream 232905 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 366366 18439507 ~ 18493790 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding downstream 1111992 19185133 ~ 19195816 (+)
AMCG00003311 LOC103355274,LOC101166281 coding downstream 1137442 19210583 ~ 19224956 (+)
AMCG00003315 slk coding downstream 1342551 19415692 ~ 19454966 (+)
G142014 NA non-coding upstream 61001 17939861 ~ 18000435 (+)
G141999 smc3,LOC107685530 non-coding upstream 220832 17838711 ~ 17840604 (+)
G141966 NA non-coding upstream 348572 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 357976 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 543515 17517720 ~ 17517921 (+)
G142062 NA non-coding downstream 421783 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 683772 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 762399 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 769313 18842454 ~ 18842729 (+)
G142146 NA non-coding downstream 1439342 19512483 ~ 19513132 (+)
AMCG00003291 bbip1 other upstream 336055 17721244 ~ 17725381 (+)
G141962 NA other upstream 382914 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1502230 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1560442 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3455888 14601317 ~ 14605548 (+)
G142078 NA other downstream 515433 18588574 ~ 18692204 (+)
G142172 NA other downstream 1462552 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1545740 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1578035 19651176 ~ 19658477 (+)

Expression


Co-expression Network