AMCG00003305


Basic Information

Item Value
gene id AMCG00003305
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18306046 ~ 18339835 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003305
ATGGACACAAGAGACTCTGCAACAGGGTTTCAAGAGGAAGCGGCCAGGTATCCAGACGGGACAGCGGGGTATGATCCTGACAGTCTTGGAAGTCGCCGCGTCAATGGGGTCTCCAAAGCTTCCCACTGCCTTTGGGGCCAAAGCAAAAAGGTCGGTTTGGTGCACAAACGGAGTACcgaccagcagcagcaggatcGGGACCAGTCAGGATTGCCTTTCAGCGAGGATGAAATCAAAGTGGCCGGCGACGGGGAGAAAGTTTCCAGCCGCAGACGGAATGGACAGGAAAAAGTCAGCGGCGGggatgctgctgctgcggctCCACTTTTAACTCCTGTGAATAAAATGCACGCTGATCATTTGCCCAGGAATAGAAGGAGCAGCCCTGGACTTGGAAAGGAGAATAAAGCATCGAGATCATCCATTGCACTGGACGGGGGTGCCTTGGCTCCGGTTCCCCGGCGAGAGCGCAGCGCCTCGGCGCCGGGGCGCAGACTGATCCGGTCTGAGTTTAGATGGAGCAGCGAGGAGAGCAGGATGCGCAATGCTGGACAGGACGACTTGAAACTGACCAGTTCCACCTTCGCCTTGACTGGGGACTCTGCTCACAACCAAGCCATGGTGCACTGGTCTGGCCAAAACAGCAGCGGGGAAACCTTTGTTCTCATCACAGGCGAGAATGATGACCTGTCTGAAGTGATTGAACTCCCTGAAGTAAAGGACCAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003305 True 729 mRNA 0.56 3 18306046 18339835

Neighbor

gene id symbol gene type direction distance location
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding upstream 232905 18061436 ~ 18073141 (+)
AMCG00003301 NA coding upstream 247031 18040775 ~ 18059015 (+)
AMCG00003295 smndc1 coding upstream 409341 17892223 ~ 17896705 (+)
AMCG00003284 NA coding upstream 903296 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 951167 17332334 ~ 17354879 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 99672 18439507 ~ 18493790 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding downstream 845298 19185133 ~ 19195816 (+)
AMCG00003311 LOC103355274,LOC101166281 coding downstream 870748 19210583 ~ 19224956 (+)
AMCG00003315 slk coding downstream 1075857 19415692 ~ 19454966 (+)
AMCG00003316 NA coding downstream 1229969 19569804 ~ 19573974 (+)
G142014 NA non-coding upstream 305611 17939861 ~ 18000435 (+)
G141999 smc3,LOC107685530 non-coding upstream 465442 17838711 ~ 17840604 (+)
G141966 NA non-coding upstream 593182 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 602586 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 788125 17517720 ~ 17517921 (+)
G142062 NA non-coding downstream 155089 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 417078 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 495705 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 502619 18842454 ~ 18842729 (+)
G142146 NA non-coding downstream 1172648 19512483 ~ 19513132 (+)
AMCG00003291 bbip1 other upstream 580665 17721244 ~ 17725381 (+)
G141962 NA other upstream 627524 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1746840 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1805052 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3700498 14601317 ~ 14605548 (+)
G142078 NA other downstream 248739 18588574 ~ 18692204 (+)
G142172 NA other downstream 1195858 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1279046 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1311341 19651176 ~ 19658477 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001501 si:ch211-112b1.2 coding NC_007112.7 CM002885.2 48921944 ~ 48922273 (-)