AMCG00003306 (LOC106586852,LOC105012299,LOC107729347,LOC107746059)


Basic Information

Item Value
gene id AMCG00003306
gene name LOC106586852,LOC105012299,LOC107729347,LOC107746059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18439507 ~ 18493790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003306
AGATTATGCTGCTGACTGACCCAGAGATCGAAAGCAGTTTGCTGATCAGCTCAGATGAAGGCGCCACCTACCAGAAGTACCGTCTGAATTTCTACATTTTGAGTTTGTTATTCCACCCTGAGCAGGAGGACTGGATCCTGGCATACAGCCACGACCAAAAGCTCTACAGCTCTGTGGAGTTTGGAAGAAGATGGCAGCTCGTTCATGAACGAGTGACCCCCAACCGCTTCTACTGGTCAAAAATGGGCTTAGACAAGGAGCCTGGGCTAATTCACCTGGAAACCAGTGTTTCAGAAACACAAGCTCAATATGTCACCTGCAAGCTTCAGAACTGCTCGGAGGCCAACAAAGGCAAACCATTTCCAGGATACATTGACCCCAATTCCCTGGTGGTTCAGGATGAGTATGTGTTTGTTCAGgtGTCAACAGGCGGCAGGCCAGTTTATTATGTGTCTTACAAAAGAGAAGCCTTTGCACCAATGAAGCTACCAAAGTACACTTTACCTAAGGACATGCATGTAATCAGCACAGATGAGAACCGCGTGGTTGCTGCTGTGCAAGAGTGGAATCAGAACGACACGTATAACCTGTATGTGTCAGAGGCCCGAGGCGTTTTCTTCACTCTGGCCCTGGAGAACGTCATGAGTAGCATTGGACCAGAAGGCAACATCATGATTGATCTCTACGAGgtagcagggataaaaggaatGTTCTTGGCGAACAAGAAGCTTGAAAACCAAGTGAAGACCCACATCACGTACAACAAGGGCCGAGACTGGCGTCTGCTGCAGGCCCCGTCCGCGGACCTGAGGGGGAACGACGTCCACTGCGTTCTGcCTTACTGCTCCTTGCACCTACATCTACAGGTATCAGATAATCCATACACTTCTGGCAATATTGCAAGCAAAGATTCAGCCCCTGGAATTATAGTGGCTACAGGATCCATTGGGTCTGAGCTGTCAAACACTAATGTCAGCATGTTCATCACATCTGATGCTGGGAACACCTGGAGACAGatctTTGACGAAGAGTACAGCGTCCTCTATCTGGATCAGGGTGGTGCTCTAGTGGCAATTAGACACACCCCACTACCCATCAGACACCTTTGGTTAAGTTTTGATGAAGGCAGGTTGTGGAACAAGTACAGTTTCACATCCACTCCCCTGTTTGTGGATGGAGTGTTGGGAGAACCTGGAGATGAAACTCTTATAATGACaaTTTTTGGACATGTAAGTCATCGGTCCGAGTGGCAGCTTGTCAAAATTGACTTCAGGTCCATTTTTAATAGGAGGTGTATTGAGGCAGATTATCAGACATGGCATCTGCACAACCAGGGTGAACCTTGCATCATGGGAATGAAAAGAATCTACCGGAAACTCAAGCCGATTGCCAGATGCGTTATGGGAAAAGATTATTCTGTCACAATGATATCAGAACCCTGTCTCTGTACAGAGTCAGACTTTGAATGTGATTATGGTTATGAACGTCGAGGAGATGGAAAGTGCACACCGGCCTTCTGGTTCGTTCCCTCTTCTATGTCAAGAAGCTGTAGCTCTGGGAAGAGTTTCCTCAACAGCACCGGgtACCGGAAGGTGGTGTCCAATAACTGCACTGCTGGGGTGAAGGAGCTCTATACAGCCAGGAAGCAGCAGTGTCCCAACCGTCCCCCCAGGGGCCTCCATCTCGTCACCAATGAAGGAAAGCTGACAGCTACACTGGGAGCCAACGTCACTTTCCTCGTCTTTCTGGAAGAAGGCGACGGATCCAGGACAAGCATCATGGTGGATTTCGGGGATGGAAATGCGGTTTCGTATGCCAATGTGAGCTCCATTGAGGACGGCATCAAGCACGTTTACAAAAACGTGGGGGTGTATAAAGTCTCTGCTATTGGAGAGAACAGTCTCGGATCAGACAGCGCCGTCCTCTACCTGCATGTAACATGTCAGCTGGAACATATTCACCTCTCGTCTCCTTTTGTGGCTGTGAAGAATAAAGAAGTCAATCTAACAGCAGTCTTGTGGCCAAGTCAAGTCGGAACAGTCACTTATATCTGGTGGTTTGGAAATAGCACTGAGccAGTAATCACATTAGAAGGAAGTGTTGCCTTTACATTCACAAGGGAAGGAATAAACACTGTCACGGTGCAGGTGTCTGCTGGGAGTGCCATACTGCAAGACAAAAAGACTATTGCTGTTCATGAATATTTCAGGTCCCAGCTTTTAGCTTTCTCTTCCAATTTGGATGACTACAACCCTGATGTTGCTGAGTGGAGACAGGATGTCAGCAGAGTCATCAGGAATTCTTTGGTGCAAGCCACGGGGATTGTGCAGGAACAGCTCCTGGTCACGGTTCTCCCTGGCTTACCAACAGCTGCTGAGTTCTTTCTGTTACCAGACAAAGAGTTAACAGAGGGAAAGTCAGAAAGAAATGCAGCCCATTTAGATCAGCTTTCGGAAATGTTGCTGGGGGCCCTCAACCAGAACCTAGTGCAGTTTACTCTCCGGCCAGGTGTTCAAGTCACAGTGTATGCAGCTCATTTATCAGCAGCTCCTCTAGTGGATACAAGTGAAAGTCACAGTGGCTCGGCAATGCTCATGTTGCTGTCAGTTGTGTTTGTGGGTTTAGCAGTCTTTGTCATCTATAAATTTAAAAGGAAGATCCCAGGCATCAATGTCTATGCGCAGATGCAGAAcgaaaaagaacaagaaatgaTCAGTCCAGTCAGTCCCATGGAAAGCACTCCTAATAGCACGCAGAGAGAATTGGTGACTTCTTTGGAGCGACTGGACGAGGAGCTGGACACACAGACCATAGGATGCATTCCAACACATGCTGACATCAAACTTTCTACGGATATCCCCacatatgtaaatgtttgaACTCTGGGACCCAAAACTATAGATTCAGTTGTGTTATGGACCTTGCAAACCATTCAGacacaaaaaaaggttttaagCTTTATACCTGTGCATGTGGACATCGCTGACACAAACTGTGCTCCGTGGATATCTGAAGATACTGTGTACAGgtttttttgtatgtctctATAAAATAGCTAatttttgattacatttatttatataagatACAGTACATACTTCTTATGGGAAAAAAGCCTGCATGTAGAAGAGAACCTTTTGGTTTGCTAAAGTggcttttatgtttatttgctCTATTTTAATGCTAACAAGAGTGATACGCTATTTATTCATgagaatatatttcaaaaaagggagaaaaaaatgtaaaaaaaaaatcttagccATTCTATTTTTTGTAAATCATAAATAAGTGTTTGTGAGAAATGTATGAATTGTAATATTCTAAActatactaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: VPS10 domain-containing receptor SorCS1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003306 True 3349 mRNA 0.45 24 18439507 18493790

Neighbor

gene id symbol gene type direction distance location
AMCG00003305 NA coding upstream 99672 18306046 ~ 18339835 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding upstream 366366 18061436 ~ 18073141 (+)
AMCG00003301 NA coding upstream 380492 18040775 ~ 18059015 (+)
AMCG00003295 smndc1 coding upstream 542802 17892223 ~ 17896705 (+)
AMCG00003284 NA coding upstream 1036757 17377073 ~ 17402750 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding downstream 691343 19185133 ~ 19195816 (+)
AMCG00003311 LOC103355274,LOC101166281 coding downstream 716793 19210583 ~ 19224956 (+)
AMCG00003315 slk coding downstream 921902 19415692 ~ 19454966 (+)
AMCG00003316 NA coding downstream 1076014 19569804 ~ 19573974 (+)
AMCG00003321 NA coding downstream 1094844 19588634 ~ 19605421 (+)
G142014 NA non-coding upstream 439072 17939861 ~ 18000435 (+)
G141999 smc3,LOC107685530 non-coding upstream 598903 17838711 ~ 17840604 (+)
G141966 NA non-coding upstream 726643 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 736047 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 921586 17517720 ~ 17517921 (+)
G142062 NA non-coding downstream 1134 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 263123 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 341750 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 348664 18842454 ~ 18842729 (+)
G142146 NA non-coding downstream 1018693 19512483 ~ 19513132 (+)
AMCG00003291 bbip1 other upstream 714126 17721244 ~ 17725381 (+)
G141962 NA other upstream 760985 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1880301 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1938513 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3833959 14601317 ~ 14605548 (+)
G142078 NA other downstream 94784 18588574 ~ 18692204 (+)
G142172 NA other downstream 1041903 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1125091 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1157386 19651176 ~ 19658477 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001499 LO017711.1 coding NC_007112.7 CM002885.2 48581374 ~ 48615105 (-)
grasscarp (Ctenopharyngodon idella) CI01000119_00511599_00557520 NA coding CI01000119 null 511599 ~ 557893 (+)