AMCG00003319


Basic Information

Item Value
gene id AMCG00003319
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19484791 ~ 19488202 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003319
ATGGTATTATGTGctataaatgcatgcaaaaatGGGAGGTATACGTTGTGTCAATGTCAGTATATGAAGAAAACAGTACAACGCATTGGGTGTTTGAGGTTTGATGGCTTCATTCCTCTCTGCTCCTGTGCCACAGGGACTGAACTGGATGATGTGAAGCGGCTGCTGAAGGGCGGCCGGTCCTGCAGTGTCAGCCCGACACGGTCCCCGTCCAACACCCTGCCCATCCCCAAAAAGGCCACTGTTGAAACAAGAATCATAACAGAAGGTTCCCAGACAGTATCAGGACAGTATGACACCACCATCCTGGACTCTGCCCTGCCCTCTTACATGTGGACGAGCTCCACTCTGCCCAGTGGGGCCTCTGCCATGAGTGGCTACGGCTTCCATGCAAGCCCTAATAATCTGTCTCCTGGGTCCTCGCTCCTCAACACCCACTCCCAGTCGCCCTCCTCCCTCTCAGtgtatGGTGTTCAGAACAACCTGGCAAACGTGTCCAGTGGCGTCCTCACCAATTCCAATGGCACCCACATTTATGGGGTGCAGAAGAATGTGTCCCATACAACACATGGGTCTGCTGTGGTCAGCACTGGAGTCTCCACATCGTCTGTTACTTCCACCAGCGCCCACAATGATGATGTCTTCCGCAAGGATTACAAGTTCCTGCTGTTGGAGAAGGAGAATGTGCCCACCAAGAAGGATACTGAGCTTCTCATCATGACCAAGGACAGCGGGAAGCATTTCACCACCACTTCCACCAGCGTTGGGGGTGAGTACAGCTCTGCAGACTGA

Function

GO: NA

KEGG:

id description
K07603 COL17A, BP180; collagen type XVII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003319 True 792 mRNA 0.53 5 19484791 19488202

Neighbor

gene id symbol gene type direction distance location
AMCG00003317 NA coding downstream 21926 19456531 ~ 19462865 (-)
AMCG00003314 NA coding downstream 69969 19402585 ~ 19414822 (-)
AMCG00003313 NA coding downstream 230074 19231811 ~ 19254717 (-)
AMCG00003308 NA coding downstream 355409 19120860 ~ 19129382 (-)
AMCG00003309 cfap58 coding downstream 363942 19082351 ~ 19120849 (-)
AMCG00003318 NA coding upstream 86723 19574925 ~ 19586023 (-)
AMCG00003325 NA coding upstream 145686 19633888 ~ 19654154 (-)
AMCG00003326 LOC106564630,LOC106588642 coding upstream 168463 19656665 ~ 19661649 (-)
AMCG00003330 LOC106588656,LOC106564629,LOC105012231 coding upstream 211784 19699986 ~ 19706889 (-)
AMCG00003336 cnnm2,LOC107588659,LOC107673921,LOC107656926,LOC107585325,LOC107716327 coding upstream 259224 19747426 ~ 19762294 (-)
G142090 NA non-coding downstream 647306 18835540 ~ 18837485 (-)
G142066 NA non-coding downstream 1178108 18306362 ~ 18306683 (-)
G142064 NA non-coding downstream 1179813 18304631 ~ 18304978 (-)
G142060 NA non-coding downstream 1197579 18287003 ~ 18287212 (-)
G141879 LOC107575789 non-coding downstream 2546745 16937634 ~ 16938046 (-)
G142176 NA non-coding upstream 60439 19548641 ~ 19548932 (-)
G142200 NA non-coding upstream 109127 19597329 ~ 19599114 (-)
G142348 NA non-coding upstream 692593 20180795 ~ 20181023 (-)
G142357 NA non-coding upstream 887184 20375386 ~ 20375626 (-)
G142404 NA non-coding upstream 1166861 20655063 ~ 20669631 (-)
G141826 NA other downstream 2736360 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 4343972 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 4810371 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 6054467 13407272 ~ 13430324 (-)
G141004 NA other downstream 6605370 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 55435 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 313877 19802079 ~ 19876762 (-)

Expression


Co-expression Network