AMCG00003320


Basic Information

Item Value
gene id AMCG00003320
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19543637 ~ 19569615 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003320
atgGAGGCTTCCGGGTCCTTGGAAGTCAGGTGGGTGCAGGGTATCACCAGCCAGCATGTGGGATTTGTGGACAAAAAGACCCCGTGCTACCCCTGTGGGAATTACATAATTTTCCTTGACCTGGAGTCCAAGTCCAGGAGAGTGCTGCCGTGCCCAGGCCGGGGGCTGGGGGCCTTCGTGGGAAATGGGAACAGCAGCATGGTGGCCTTCTCTGAGCACAGGCtcaatccatccatctttgTATACACCTACCCTGCGCTTGTCATGAGGAACGAGCTGAAAGGGGTAGCCCAGTTGGACTATACTGCCCTTGCGTTCAGCTACTCAGGCCCATATTTAGCCAGCTGCTCCTCCATTCCAGAGCACACCTTGACAGTGTGTGGCAAACTCTCTTACTTTGGCCCTCAGATGCCAGTTTCAGCTCTGGCAGGACTCATTGGGGAGAGGGCAAAGACCTTTGTGCCAAGAGAAAAAATGCTGGCACAGGTCCACCCCACCTCGTTCTGCTGGACACCCACCTCTGACCTCTATGTGGGTTGTGCTGAAGGTCACTTGTTGCTTGTGAACCCTGAGACTCAGAACGTCACTGTGCTCTTTAACCCCCACCAGAAGAGAGACATCCCAGATGAAGCAGAGCTTCAAGAAGGCAGCCTTAACAGCTTGGCTCTGCACAAGGATGCACACAGGATGTTTGCTGCAGGAAATGATGGAGCATTACGTTGCTTACATATCAAGGGCAAACAAGTGGAGGTAACGCAGTGCTGGAAAGCTGAGGAGCCACTCACACACATTGGATTCTCCCCTGACTACGAGGCTCTTATTCTGTCTACCTGTAATGCGACCAGCCTGGCATGCTGCCCAACtgcagagtgtgtgtctgtggggacCGCCTCTGGACACATCTACTTCATAGACCTGACCCAGAAGGAGCTGCCGCGCCCGGTTCACAGGGTTCACCTCTACAGAGTGCCTGTGGAGCATCTCCAgtatgACCAAGGAGGAAGTTTCCTCATCAGCGGAGCTTCAGACTCACATGTGTTTGTTCTGGACGCCAGACCATCCAAAATGTTTGAGGTTATTGGATACACAGAGGCTGCAGGTTCTGTTGTGGATCTATCTTCTCTTTACAACAAGGATAGCAAACAGGTGAACGTGCTGGTGCTGTCTGCAGGGAACAAAGAAAACTGTGTGAAAGAAGGGAGCTGCCTGGAGATATTCATGCTGCAGGCCCAGCTATTGAAAGGTGGCTGTGCTGATCGACGGGGCTGTATTCGAGATGAAATCCTGCAGAAACGGCACTATGCTGCTGCTCTGCCCTTCTCTTCTGCAGTCCTGGGGCCGAACAACAGAGCCTTCGGCTACTGCATCCGGACTAGGACTATCCAGAAATTCCTCCTGGATGAGGGGATTTCAGACACTAAAGATGTTGTCCAGGTGACCCCAGAACGGGAAACTGAAGGTCACGCTCTTGGTCCAGCTTCTCTTCTCCTCTCGCCCCACCAGCTGTGGCTGGCATCTCTGGGGAAGGACGGTTCGCTGCGTGTCTTTGAGACGTCCTGCATGgaGAAAGTCCTCCAGCTGCAGAGCCATTCCAGCCGGTTGAGTGGGCCTGTGGCGCTGGCCTTCTCCCTGGACAGCCAGACCCTCCTCACCACCGGCCTCCGGGACGGGGCTTTGGTCCGTAATGAGATGGAGATGCAGATCCTGGCCTATTGTTACGAGCGTGATGTCATCAAAAGAGAATGCTGGGACTCCATGAAGGTCAAAGGGCGAGCAATCAAGGCTTTTCACCTAGAAGATGAGGTGAAGAACTACCCCATGAAGGAGCGCAcccagagagagatggaggagtTGGAGAGAGTGAAAACACTGCGGAGGATCGAACAGGCAGATCTCAGTATCCGGAAGCAGATTTTGGGGGACGAGTCCAAGACTGCACCTCAGAAGGATGAAGATGAGGGGGGTGAAGAGGCAGAGAGCCCAGCTCTCATGGGCAGTCTGAGCGCTCAATATGGTGGCCTCAGCCCTCACCTGTACAATCAGTTTGAGCTGCACACCAGGGAGCAGAAGATCAACCAGATCATCCTGTTGCAGGTCCGTAATGAGATGGAGCTACAGATCGAGGCGTATTGCTACGAGTATGACGTCATCAAAAGGGAATGCTGGGACTCCATGAAGGTCAAAGGGCGAGCAATCAAGGCTTTTCACCAAGAAGATGAGGTGAAGAACTACCCCATGAAGGAGCGCAcccagagagagatggaggagctggagagagTGAAAACACTGCGGAGGATTGAACAGGCAGATCTCAGTATTGTGGAGGACGAGTCCAAGACTGCACCTCAGAAGGATGAAGATGAGGGGGGTGAAGAGGCAGAGAGCCCAGCTCTCATGGGCAGTCTGAGTGCTCAATGTGGTGTCCTCAGCCCTGACCTGTACAATCAGTTTGAGCTGCACACCAGGGAGCAGAAGATCAACCAGATCATCCTGTTGCAGGTACAGCATTGA
>TU178860
GGTCCGTAATGAGATGGAGCTACAGATCGAGGCGTATTGCTACGAGTATGACGTCATCAAAAGGGAATGCTGGGACTCCATGAAGGTCAAAGGGCGAGCAATCAAGGCTTTTCACCAAGAAGATGAGGTGAAGAACTACCCCATGAAGGAGCGCAcccagagagagatggaggagctggagagagTGAAAACACTGCGGAGGATTGAACAGGCAGATCTCAGTATTGTGGAGGACGAGTCCAAGACTGCACCTCAGAAGGATGAAGATGAGGGGGGTGAAGAGGCAGAGAGCCCAGCTCTCATGGGCAGTCTGAGTGCTCAATGTGGTGTCCTCAGCCCTGACCTGTACAATCAGTTTGAGCTGCACACCAGGGAGCAGAAGATCAACCAGATCATCCTGTTGCAGG
>TU178862
TTTCTGTGTCTATAAGGTCCGTAATGAGATGGAGATGCAGATCCTGGCCTATTGTTACGAGCGTGATGTCATCAAAAGAGAATGCTGGGACTCCATGAAGGTCAAAGGGCGAGCAATCAAGGCTTTTCACCTAGAAGATGAGGTGAAGAACTACCCCATGAAGGAGCGCAcccagagagagatggaggagtTGGAGAGAGTGAAAACACTGCGGAGGATCGAACAGGCAGATCTCAGTATCCGGAAGCAGATTTTGGGGGACGAGTCCAAGACTGCACCTCAGAAGGATGAAGATGAGGGGGGTGAAGAGGCAGAGAGCCCAGCTCTCATGGGCAGTCTGAGCGCTCAATATGGTGGCCTCAGCCCTCACCTGTACAATCAGTTTGAGCTGCACACCAGGGAGCAGAAGATCAACCAGATCATCCTGTTGCAGGATGTTATccacaatgttaaaatggccTTCAATGAGGAGTTTGACG
>TU178865
GTTGAATCTGCTTGATTCTGAGTCTGGTGTCTTACCTTGTTGTTCTGTACTGTCGGTCTCTGAATGTAGGCGACCAGCCTGGCATGCTGCCCAACtgcagagtgtgtgtctgtggggacCGCCTCTGGACACATCTACTTCATAGACCTGACCCAGAAGGAGCTGCCGCGCCCGGTTCACAGGGTTCACCTCTACAGAGTGCCTGTGGAGCATCTCCAgtatgACCAAGGAGGAAGTTTCCTCATCAGCGGAGCTTCAGACTCACATGTGTTTGTTCTGGACGCCAGACCATCCAAAATGTTTGAGGTTATTGGATACACAGAGGCTGCAGGTTCTGTTGTGGATCTATCTTCTCTTTACAACAAGGATAGCAAACAGGTGAACGTGCTGGTGCTGTCTGCAGGGAACAAAGAAAACTGTGTGAAAGAAGGGAGCTGCCTGGAGATATTCATGCTGCAGGCCCAGCTATTGAAAGGTGGCTGTGCTGATCGACGGGGCTGTATTCGAGATGAAATCCTGCAGAAACGGCACTATGCTGCTGCTCTGCCCTTCTCTTCTGCAGTCCTGGGGCCGAACAACAGAGCCTTCGGCTACTGCATCCGGACTAGGACTATCCAGAAATTCCTCCTGGATGAGGTACCCACTGTATGGGGGATTTCAGACACTAAAGATGTTGTCCAGGTGACCCCAGAACGGGAAACTGAAGGTCACGCTCTTGGTCCAGCTTCTCTTCTCCTCTCGCCCCACCAGCTGTGGCTGGCATCTCTGGGGAAGGACGGTTCGCTGCGTGTCTTTGAGACGTCCTGCATGgaGAAAGTCCTCCAGCTGCAGAGCCATTCCAGCCGGTTGAGTGGGCCTGTGGCGCTGGCCTTCTCCCTGGACAGCCAGACCCTCCTCACCACCGGCCTCCGGGACGGGGCTTTGGTGTGTGTGCAGCTCCGGT
>TU178867
CTCAGATGCCAGTTTCAGCTCTGGCAGGACTCATTGGGGAGAGGGCAAAGACCTTTGTGCCAAGAGAAAAAATGCTGGCACAGGTCCACCCCACCTCGTTCTGCTGGACACCCACCTCTGACCTCTATGTGGGTTGTGCTGAAGGTCACTTGTTGCTTGTGAACCCTGAGACTCAGAACGTCACTGTGCTCTTTAACCCCCACCAGAAGAGAGACATCCCAGATGAAGCAGAGCTTCAAGAAGGCAGCCTTAACAGCTTGGCTCTGCACAAGGATGCACACAGGATGTTTGCTGCAGGAAATGATGGAGCATTACGTTGCTTACATATCAAGGGCAAACAAGTGGAGGTAACGCAGTGCTGGAAAGCTGAGGAGCCACTCACACACATTGGATTCTCCCCTGACTACGAGGCTCTTATTCTGTCTACCTGTAATG
>TU178878
cacaaatgtaaaaagcCAAACAGtgataatattttaatgcagcttccagttttgttaatttaaccgagtttagatttttgtttatgGAGGCTTCCGGGTCCTTGGAAGTCAGGTGGGTGCAGGGTATCACCAGCCAGCATGTGGGATTTGTGGACAAAAAGACCCCGTGCTACCCCTGTGGGAATTACATAATTTTCCTTGACCTGGAGTCCAAGTCCAGGAGAGTGCTGCCGTGCCCAGGCCGGGGGCTGGGGGCCTTCGTGGGAAATGGGAACAGCAGCATGGTGGCCTTCTCTGAGCACAGGCtcaatccatccatctttgTATACACCTACCCTGCGCTTGTCATGAGGAACGAGCTGAAAGGGGTAGCCCAGTTGGACTATACTGCCCTTGCGTTCAGCTACTCAGGCCCATATTTAGCCAGCTGCTCCTCCATTCCAGAGCACACCTTGACAGTGTGG

Function

GO: NA

KEGG:

id description
K24223 CFAP43, WDR96; cilia- and flagella-associated protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003320 True 2511 mRNA 0.54 19 19543637 19569532
TU178860 False 407 TUCP 0.52 3 19543648 19544684
TU178862 False 479 TUCP 0.50 4 19552871 19554112
TU178865 False 943 TUCP 0.55 6 19555443 19563278
TU178867 False 435 TUCP 0.51 4 19565395 19566587
TU178878 False 464 TUCP 0.51 3 19566913 19569615

Neighbor

gene id symbol gene type direction distance location
AMCG00003319 NA coding downstream 55435 19484791 ~ 19488202 (-)
AMCG00003317 NA coding downstream 80772 19456531 ~ 19462865 (-)
AMCG00003314 NA coding downstream 128815 19402585 ~ 19414822 (-)
AMCG00003313 NA coding downstream 288920 19231811 ~ 19254717 (-)
AMCG00003308 NA coding downstream 414255 19120860 ~ 19129382 (-)
AMCG00003318 NA coding upstream 5310 19574925 ~ 19586023 (-)
AMCG00003325 NA coding upstream 64273 19633888 ~ 19654154 (-)
AMCG00003326 LOC106564630,LOC106588642 coding upstream 87050 19656665 ~ 19661649 (-)
AMCG00003330 LOC106588656,LOC106564629,LOC105012231 coding upstream 130371 19699986 ~ 19706889 (-)
AMCG00003336 cnnm2,LOC107588659,LOC107673921,LOC107656926,LOC107585325,LOC107716327 coding upstream 177811 19747426 ~ 19762294 (-)
G142090 NA non-coding downstream 706152 18835540 ~ 18837485 (-)
G142066 NA non-coding downstream 1236954 18306362 ~ 18306683 (-)
G142064 NA non-coding downstream 1238659 18304631 ~ 18304978 (-)
G142060 NA non-coding downstream 1256425 18287003 ~ 18287212 (-)
G141879 LOC107575789 non-coding downstream 2605591 16937634 ~ 16938046 (-)
G142200 NA non-coding upstream 27714 19597329 ~ 19599114 (-)
G142348 NA non-coding upstream 611180 20180795 ~ 20181023 (-)
G142357 NA non-coding upstream 805771 20375386 ~ 20375626 (-)
G142404 NA non-coding upstream 1085448 20655063 ~ 20669631 (-)
G142406 NA non-coding upstream 1089997 20659612 ~ 20743604 (-)
G141826 NA other downstream 2795206 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 4402818 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 4869217 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 6113313 13407272 ~ 13430324 (-)
G141004 NA other downstream 6664216 12861426 ~ 12879421 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 232464 19802079 ~ 19876762 (-)

Expression


Co-expression Network