AMCG00003321


Basic Information

Item Value
gene id AMCG00003321
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19588634 ~ 19605421 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003321
ATGGAGCGCCTGAAATTAGTGTTGCAATATTTCCAGTCCAATTCGGAATCCATCTCCAACGGTATCTGTGTGGTGCTGTCCCTGGTCAGTGTAAAGCTGTACACCCAGATGGATTTTAAATGCCCCTGTTTGCCACAGTATAACAAAATATACGGGATGGGGATCATGTTCGTCCCGCCgataatattatttttcctggGGGTGCTAATTAACCGGCACACAGGTGTCATGATGGAGGAGTGGGTGCGACCCCCCGGCAAGAGGGCCAAAAATACTGCTGTGGTGAaGTTCATGTTTTCCTCCATGATGCAGAGAGCCTTGCTCGCCCCCATGGTTTGGATCCTAGTGAGCCTTCTGGATGGGAAGTGCTTTGTATGTGCCTTTAGCATCACTGTGGATCCCAAGCATTTCTCAGGCATGCCCAACAACACAGGCCTTGACATCATCCGCCTCATGGCCAAGATACCCTGCAAAGAAGACCCAATCTTCCACACCCAAGCCTTCCGCAAAGCAGTCTCCCGCTACCTGCAGTGCTGGTCACAAGCTGTTGGCTGGGGTATCCTGCTGTTCTTCATTGTTCTGGGGGCAGTAGCCCGTATCATCAAGCCCTGCTTTGACCACGCCACCTTCCTGCAGACACGCTACTGGAGCAACTACCTGGACATTGAGCAAAAACTCTTCGACGAGACCTGCTGCCTGCATGCCCGCGATTTTGCCCGTAAGTGTGTCATCCAGTTCTTTGAGAGCATTCAGGGGGACGTGCCACCTTGCCTGCCACAGCCACCCCACTCaggggaggaggagatggaagACTTCTTGCATGGCATAACCAGGCTGGACCAGGTGGATAAGGTGCTGGAGACCTGGTACTTCAGCAAGCCCGAGTTAGATGTCACCAAGATTGCCACGCGTGCCCGGATCTGCATCGCATGGGAGGATAGCAAGGGGAAGACGCACTACTCTGACTTCTTACAATCGAACCAGGAGTCGTTCATGAATGGCTTCTGTGGGATCATGGCTCTGGCCAGCGCGCAGTTATACACGGCTTTCGAGTTCAACTGCCCCTGTCTCCCGGAGTACAACTATGCCTACGGGCTGGGCATCCTATTCCTGCCCCCGGTGGTGCTCTTTTTAATCGGTTTTGTGCTGAACAATAACGTGTCCATGCTGGCGGAGGAGTGGAAGCGGCCGGTGGGGAAGCGGCGCAAAGACCCGGCGGTGCTGCGCTACATGTTCTGCTCCATGACGCAGCGGTCCATGATCGCCCCCGCCGTGTGGATCTCCGTCACCCTGATGGACGGCAAGAGTTTTCTCTGTGCTTTCAGCATCGACTTGGATATAGGCAAGTTTGGCAACGCCAGCCATGGACTCTCGGAAGACGAAACGCAGAAACTGCTGGCAAAGATCCCCTGCAAGGACATCTTCGATGGTGGGGCGGTGATCTCGCGAGAAGCGGCGGAGCGGTACATCCGTTGTATATCACAGGCTTTCGGATGGATCTTCCTGCTGCTGATGACCGTACTGGCTTTCATGGTGAGGGCGATCCGGCCCTGCTTCACGCAAGCTGCATTCCTGAAGACCAAGTACTGGTCTCATTACATCGACATTGAGCGCAAGATGTTTGATGAAACCTGCACAGAGCATGCCAAGTCCTTCGCCAAGGTGTGCATCCAGCAGTACTTCGAGAGCATCAGCGGAGAGATGCGCACCTTACACCACCATCACTCCCCCCACGAAGGGGACGACGACGACGAAGGGAAGCACGTGAGTGACGATGACAAACTGAGAGGCATCAGGGCCCAAGATGAAGTGAACAAACTGCTCAGGAACTGGCACACCTGCAAACCTTCCCTCGATCTGAAAAAGGAGGAAGTGGCACAGAACGGACATGCCAATGGCAACGGAGACATAAACCATGCAGAACCCCAGCCAAAGAAAGAATGGGCGACCTACTACAGTAAGGTCTGAGTGCCACACACCCGCACACTCGCACAACGTGAAAAACATACAAGCTTTGGAAAACACAGCTGTAAGAAGCTGGGGGAGAATCTCTTTTTTGAGAATCATGGCTATCACCCCAGTGCCCTTCTGTGCTGGATTGACAGAGACTGGCATTGTCTGTGTATCTTGTCTACCTATGGCTGTGTGGTGCTGGACAAACCGGATCACCCatccttttcctctttttgaATGCTGATGTTCTGGATTTGACTGAATCAGTAATCAGATAAGTCTGTTCTATCATCCCAACAAATTTGCACATATATACCATATTACCATATACAACGGCATTCATGTTCACTGTATGGTCAAAGGAATTGTTTTCATGGCTAAAACTTGAGCATAGATATCACAACTAGTGGTTTAAGACTGAATAAGACAGGAAGACATGTAGTCATAgtcatagtttatttatttttggtgaaaGCTGCTTATCTGGGCCAAAAGGGACAATCGGCTCACTTATAACTGCCCTCACTTACAATGTAGAGGGAAGCTAATATGGGAAACCTTACAAGTCCTGTGGACTAGATGTATGAAGGACAgatggggtgtgggggggtagTCAGATAATAGTGTTAAGACCACATTGATACTCTAGTGTCTGTGAAGAATATGGGACTGATTTATAGTCCTTTACATTCTATTCTGCTGCCTTTTGAAactcaaaaatacattttagcaaattGCATTTAAAGATTTCTGTATCCTGTGTGCTTCCCATAGAATACTGTACATGTAACTTATATTGGACAATAaacttaataaatacattagattttattgtgggggggggggagtttcTCAGTTTTTggtgttttctgttattttctggTAGAATAAATGTTTGTAGAATATCACTCTTAAATCTACATTGCATAATGCAATAACGACTCCACTGttctgtacaaatatatatttgtattgttctgtaGTCATCATGTAGAGCAGATGgccaaaaacaaagaatgacaAGCAAACAAATGACTCCTTTTTTAAAGATTGATAGAAGCTACTGACAAGTCAAGTAACACAGTATTCtttatttgcattagtttgaGTCTCAGTTTTAGTCACCGAAATCTTATCTACCTCTTTGTAACACTGCATTAAAACTGCAATGCAGAATGGAATGTAAAACTAGAAGAAAAGTCACAatatttttctgtgtaataacatgaagaaataaatattttaagtggCAGGATATCCTGAAGATGAAAATCAGAGCAGTTTGCTGTCATGATTTGCATCCTTTATGGTGCAGGCGTCATTcctggctttttattttcatgtatgcTGTTACATTTTCCATGAAGTGCCTGTATACTGTGGGCTGTGCTATGCATTGGTTATTTTAACAGGCCCATCTTGCTTTCAATaacctatttatgtatttatttatgtatttatttagatatgCAATGGAGCAAAgctattaaaattgtgtttggtcatttttaataaaatgtttaattcagaCATTTGTACACAAGAACCTCTAGTCTCTGCATATACATTTTGGGATTGTAAAAGTTAACAATGATTAAAATTGTATGGTATGTAGCATACACCtttgcagatgttttttatgaagaaaatatataaatatgtaagaaaatatatgtgaataaaattatgcaag

Function

GO: NA

KEGG:

id description
K19738 CALHM1; calcium homeostasis modulator protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003321 True 3646 mRNA 0.45 5 19588634 19605421

Neighbor

gene id symbol gene type direction distance location
AMCG00003316 NA coding upstream 14660 19569804 ~ 19573974 (+)
AMCG00003315 slk coding upstream 133668 19415692 ~ 19454966 (+)
AMCG00003311 LOC103355274,LOC101166281 coding upstream 363678 19210583 ~ 19224956 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding upstream 392818 19185133 ~ 19195816 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding upstream 1094844 18439507 ~ 18493790 (+)
AMCG00003322 NA coding downstream 5333 19610754 ~ 19614023 (+)
AMCG00003328 NA coding downstream 56663 19662084 ~ 19677407 (+)
AMCG00003329 NA coding downstream 104775 19710196 ~ 19728221 (+)
AMCG00003327 nt5c2 coding downstream 122855 19728276 ~ 19741080 (+)
AMCG00003332 NA coding downstream 213597 19819018 ~ 19823045 (+)
G142174 NA non-coding upstream 47387 19541042 ~ 19541247 (+)
G142170 NA non-coding upstream 56767 19531412 ~ 19531867 (+)
G142146 NA non-coding upstream 75502 19512483 ~ 19513132 (+)
G142086 NA non-coding upstream 745905 18842454 ~ 18842729 (+)
G142085 NA non-coding upstream 747881 18835540 ~ 18840753 (+)
G142205 NA non-coding downstream 10840 19616261 ~ 19616567 (+)
G142340 NA non-coding downstream 522946 20128367 ~ 20128715 (+)
G142354 NA non-coding downstream 668912 20274333 ~ 20274616 (+)
G142376 NA non-coding downstream 990049 20595470 ~ 20599545 (+)
G142397 NA non-coding downstream 1039060 20644481 ~ 20644794 (+)
G142172 NA other upstream 51543 19535693 ~ 19537091 (+)
G142078 NA other upstream 896430 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 1863253 17721244 ~ 17725381 (+)
G141962 NA other upstream 1910112 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 3029428 16527189 ~ 16559206 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 13460 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 45755 19651176 ~ 19658477 (+)

Expression


Co-expression Network