AMCG00003323 (rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324)


Basic Information

Item Value
gene id AMCG00003323
gene name rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19618881 ~ 19633150 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003323
ATGGCCAAAAGCAAGGTGGTCTATGAACGATGTGCGTGCAGCTTGGGGTTAAAGAGTTCTGACGAGTACTGTAAGATGTCAGCAGAAATCTATGACCTTCCTCTCAACGTGTACGTCATCATCCTGGGCATCGGCCTCTTCATTTTCATGCTGAGCATGATATTCTGCTGCTACCTGTTCAGGCTAAGACGACAGGGAAGGAGAGAACAGTATGGATACAATGAGcagatgtgtgcagtgtgcttgGAGGAGTTCAGAGCCAGGGACGAGCTCGGGGTGTGTCCTTGTTCTCATGCGTTTCACAAGAAGTGTCTGGTGAAGTGGCTGGAGATCCGTAGTGTCTGCCCAATGTGCAACAAGCCCATCTGCAGGCTGACAGACGTGCGCCAGGGAGCAGAGGTGGCACAGAACCCGCAGGAGGTGTGAGGGGTGAAGGCAGTTTCCGGGCGGCCATCTTTAGGCCCTGAAAAAGCTGCCCCTACTGGAGGACTAACATCAGACTTTAGGGCATAaacactccccccacccccctattGCCACTCCAACAAAGGCCTGACCCAGGTCTCCCAAATACCACTATCAGCTTTACGGTGTCAACTGAAGAAGTTCTATTAGTCTCTTCCGccttactgaaaaaaaaactcctagATATTACAAATGGTTACATGTGGGAGCCAGTATGGCATCCCAGGAACCTTCCCAGCCTGGATGTTCCTCCTCGGCCCTGCAGCTGCAGGCCAGGAGAAGAAACCTGGACAGGGAGAGGCACTTTAATTCCAGGATGGTTTAGCCAAGAGCCACAAAAAGGGAGCATCAGGATAAGACTGGCTTTTAGGAGCCTGTGTCGATGGGTAACGCAGACAGacttcaaattaattgtttctAGTTATTTTCTATCGTTGTATGCTCTGAAATAAAGTAACTATAGGGCAGTACTGTGGAGTAGTGGCTAGGGCTCCAcactctggagcagagggtcgatcccaggtgggggcattgctgttgtacccttgagcaaggtactttaccttgattgctccagtaaatgcccagctgtataaatgggtaaaatgtaaaaaataatgataagggtgtctgctaagaaattgagtaataataataactatgtttTGGTGGTATAAACCCGCTTGCCTATTgtcatttgtttctgttaatttgCACTCATGAAAGCAGTGAGAATGGGATTTGAGAA
>TU178898
CAGACAGCAAATCACATGAGCAGGGATCTGTTTACAAACTGAACAGGAGCAGTCATATCGGTTATACAGTTATAAGGAACCTGGGCTGAGGAATGGGAATCTGGCTGGGCGTTCACTGCTGGAGGCTAAGACGACAGGGAAGGAGAGAACAGTATGGATACAATGAGGTGGTTCTGAAGGGTGCAGGAAAAAAACTAAGCCTTCTTGGAcagatgtgtgcagtgtgcttgGAGGAGTTCAGAGCCAGGGACGAGCTCGGGGTGTGTCCTTGTTCTCATGCGTTTCACAAGAAGTGTCTGGTGAAGTGGCTGGAGATCCGTAGTGTCTGCCCAATGTGCAACAAGCCCATCTGCAGGCTGACAGACGTGCGCCAGGGAGCAGAGGTGGCACAGAACCCGCAGGAGGTGTGAGGGGTGAAGGCAGTTTCCGGGCGGCCATCTTTAGGCCCTGAAAAAGCTGCCCCTACTGGAGGACTAACATCAGACTTTAGGGCATAaacactccccccacccccctattGCCACTCCAACAAAGGCCTGACCCAGGTCTCCCAAATACCACTATCAGCTTTACGGTGTCAACTGAAGAAGTTCTATTAGTCTCTTCCGccttactgaaaaaaaaactcctagATATTACAAATGGTTACATGTGGGAGCCAGTATGGCATCCCAGGAACCTTCCCAGCCTGGATGTTCCTCCTCGGCCCTGCAGCTGCAGGCCAGGAGAAGAAACCTGGACAGGGAGAGGCACTTTAATTCCAGGATGGTTTAGCCAAGAGCCACAAAAAGGGAGCATCAGGATAAGACTGGCTTTTAGGAGCCTGTGTCGATGGGTAACGCAGACAGacttcaaattaattgtttctAGTTATTTTCTATCGTTGTATGCTCTGAAATAAAGTAACTATAGGGCAGTACTGTGGAGTAGTGGCTAGGGCTCCAcactctggagcagagggtcgatcccaggtgggggcattgctgttgtacccttgagcaaggtactttaccttgattgctccagtaaatgcccagctgtataaatgggtaaaatgtaaaaaataatgtgatatattgtaacaattgtaagtcaccctggataagggtgtctgctaagaaattgagtaataataataactatgtttTGGTG
>TU178899
CAGACAGCAAATCACATGAGCAGGGATCTGTTTACAAACTGAACAGGAGCAGTCATATCGGTTATACAGTTATAAGGAACCTGGGCTGAGGAATGGGAATCTGGCTGGGCGTTCACTGCTGGAGGTTGGTGAACATTATCAGTTTTTTGGAATAGCTGAAGCAGACAGTAGTCACAAGCAAAATAGAGCACAATGCCAGTCACAGCTTGAAGCCTGTTTTCACGGGGACTTACAGACTACTGCGTGGCAGCCAGTTCAgccttttgtttcagtttggggAGCAGCAAGTTGGTTGGCAAACAAGGAAGATCCATGTGAAAACAGGTATCCAAAAggggaaaattaaaataatttgggaATAGGAGTAGTAGGCTGAGGAGGTGGGGTGAAGCTAGTGAAAATGTTTCTGCGTGAGACAAAGCAGTGACTATATTCAGTGTTGGGCTCCAGGGAGAAACTGGTGTTCGGTCTGTTATTTTTGAATCTTCATTTTTGAGGATTGGAATATTTTTTGGTTTCCCATACATACCTGAGGCAAGAAGATGTTTATCTTAACATGCAAATGCTGCAAGTGAACTTCAAATGCGTCTGATCTCTAGATAAACGGATGTGTCACCAAAATTATATTTGAGCCCAAATCCTGCTCTATGACACCCACATACATAACAACTCCTCTACATGAAAGTGAACCGGAGATGTGTTAGAGGTATGGCAGATATGGCCAAAAGCAAGGTGGTCTATGAACGTGTGTTACAGCAAGAACAATTCTGTTGGAATTCTTAAAATGTACGATTTTCCTCAAGAGGAGAGCAGGTCTTACATTTCCCGACGGCCTTTCACCAAGAACAACAGTGTTTCAGCTGATAAATGTGGGATTGAAGAGTACAATAATATCTTTGTGTGATAAGAGGTGGTGATACAATTCCAGCTGAGAGCTGTAGTTGAACTTTTAAAGCTGGCAACCTCCAGGCTTTGAGTCTTGGCTGGTTTCCTAGTGAATATTCACAGAAGGAACAAGCGAGGTGGTCCTAGCAGCAATCAACCAGGGCTGGCCTGCTAGCACGTCCATAACCCCACATTGTGACCCCTGGAAACAGCTCCCTTTGCAGTGTTGGGCTGAATTTGAACCTGCTGAGAATCAGATTTGATGCACCCGTTCCAGTGGTGTACCGGCTAAGACGACAGGGAAGGAGAGAACAGTATGGATACAATGAGGTGGTTCTGAAGGGTGCAGGAAAAAAACTAAGCCTTCTTGGAcagatgtgtgcagtgtgcttgGAGGAGTTCAGAGCCAGGGACGAGCTCGGGGTGTGTCCTTGTTCTCATGCGTTTCACAAGAAGTGTCTGGTGAAGTGGCTGGAGATCCGTAGTGTCTGCCCAATGTGCAACAAGCCCATCTGCAGGCTGACAGACGTGCGCCAGGGAGCAGAGGTGGCACAGAACCCGCAGGAGGTGTGAGGGGTGAAGGCAGTTTCCGGGCGGCCATCTTTAGGCCCTGAAAAAGCTGCCCCTACTGGAGGACTAACATCAGACTTTAGGGCATAaacactccccccacccccctattGCCACTCCAACAAAGGCCTGACCCAGGTCTCCCAAATACCACTATCAGCTTTACGGTGTCAACTGAAGAAGTTCTATTAGTCTCTTCCGccttactgaaaaaaaaactcctagATATTACAAATGGTTACATGTGGGAGCCAGTATGGCATCCCAGGAACCTTCCCAGCCTGGATGTTCCTCCTCGGCCCTGCAGCTGCAGGCCAGGAGAAGAAACCTGGACAGGGAGAGGCACTTTAATTCCAGGATGGTTTAGCCAAGAGCCACAAAAAGGGAGCATCAGGATAAGACTGGCTTTTAGGAGCCTGTGTCGATGGGTAACGCAGACAGacttcaaattaattgtttctAGTTATTTTCTATCGTTGTATGCTCTGAAATAAAGTAACTATAGGGCAGTACTGTGGAGTAGTGGCTAGGGCTCCAcactctggagcagagggtcgatcccaggtgggggcattgctgttgtacccttgagcaaggtactttaccttgattgctccagtaaatgcccagctgtataaatgggtaaaatgtaaaaaataatgtgatatattgtaacaattgtaagtcaccctggataagggtgtctgctaagaaattgagtaataataataactatgtttTGGTG

Function

symbol description
si:dkey-51a16.9 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system.
rnf122 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human RNF122 (ring finger protein 122).

NR:

description
PREDICTED: RING finger protein 122-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003323 False 1213 mRNA 0.48 6 19619598 19633150
TU178898 False 1152 TUCP 0.48 5 19618881 19633073
TU178899 True 2200 lncRNA 0.46 5 19618881 19633073

Neighbor

gene id symbol gene type direction distance location
AMCG00003322 NA coding upstream 4858 19610754 ~ 19614023 (+)
AMCG00003321 NA coding upstream 13460 19588634 ~ 19605421 (+)
AMCG00003316 NA coding upstream 44907 19569804 ~ 19573974 (+)
AMCG00003315 slk coding upstream 163915 19415692 ~ 19454966 (+)
AMCG00003311 LOC103355274,LOC101166281 coding upstream 393925 19210583 ~ 19224956 (+)
AMCG00003328 NA coding downstream 28934 19662084 ~ 19677407 (+)
AMCG00003329 NA coding downstream 77046 19710196 ~ 19728221 (+)
AMCG00003327 nt5c2 coding downstream 95126 19728276 ~ 19741080 (+)
AMCG00003332 NA coding downstream 185868 19819018 ~ 19823045 (+)
AMCG00003331 NA coding downstream 224230 19857380 ~ 19862641 (+)
G142205 NA non-coding upstream 2314 19616261 ~ 19616567 (+)
G142194 NA non-coding upstream 24614 19593878 ~ 19594267 (+)
G142174 NA non-coding upstream 77634 19541042 ~ 19541247 (+)
G142170 NA non-coding upstream 87014 19531412 ~ 19531867 (+)
G142146 NA non-coding upstream 105749 19512483 ~ 19513132 (+)
G142340 NA non-coding downstream 495217 20128367 ~ 20128715 (+)
G142354 NA non-coding downstream 641183 20274333 ~ 20274616 (+)
G142376 NA non-coding downstream 962320 20595470 ~ 20599545 (+)
G142397 NA non-coding downstream 1011331 20644481 ~ 20644794 (+)
G142412 NA non-coding downstream 1112395 20745545 ~ 20749364 (+)
G142172 NA other upstream 81790 19535693 ~ 19537091 (+)
G142078 NA other upstream 926677 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 1893500 17721244 ~ 17725381 (+)
G141962 NA other upstream 1940359 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 3059675 16527189 ~ 16559206 (+)
AMCG00003324 NA other downstream 18026 19651176 ~ 19658477 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G77017 NA unknown CI01000012 null 12080546 ~ 12083845 (-)