Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00003324 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030139.1 |
| NCBI id | CM030139.1 |
| chromosome length | 23121578 |
| location | 19651176 ~ 19658477 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006396 | RNA processing | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00003324 | True | 625 | mRNA | 0.53 | 5 | 19651176 | 19658477 |
| TU178921 | False | 447 | lncRNA | 0.41 | 4 | 19654366 | 19656155 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003322 | NA | coding | upstream | 37153 | 19610754 ~ 19614023 (+) |
| AMCG00003321 | NA | coding | upstream | 45755 | 19588634 ~ 19605421 (+) |
| AMCG00003316 | NA | coding | upstream | 77202 | 19569804 ~ 19573974 (+) |
| AMCG00003315 | slk | coding | upstream | 196210 | 19415692 ~ 19454966 (+) |
| AMCG00003311 | LOC103355274,LOC101166281 | coding | upstream | 426220 | 19210583 ~ 19224956 (+) |
| AMCG00003328 | NA | coding | downstream | 3607 | 19662084 ~ 19677407 (+) |
| AMCG00003329 | NA | coding | downstream | 51719 | 19710196 ~ 19728221 (+) |
| AMCG00003327 | nt5c2 | coding | downstream | 69799 | 19728276 ~ 19741080 (+) |
| AMCG00003332 | NA | coding | downstream | 160541 | 19819018 ~ 19823045 (+) |
| AMCG00003331 | NA | coding | downstream | 198903 | 19857380 ~ 19862641 (+) |
| G142205 | NA | non-coding | upstream | 34609 | 19616261 ~ 19616567 (+) |
| G142194 | NA | non-coding | upstream | 56909 | 19593878 ~ 19594267 (+) |
| G142174 | NA | non-coding | upstream | 109929 | 19541042 ~ 19541247 (+) |
| G142170 | NA | non-coding | upstream | 119309 | 19531412 ~ 19531867 (+) |
| G142146 | NA | non-coding | upstream | 138044 | 19512483 ~ 19513132 (+) |
| G142340 | NA | non-coding | downstream | 469890 | 20128367 ~ 20128715 (+) |
| G142354 | NA | non-coding | downstream | 615856 | 20274333 ~ 20274616 (+) |
| G142376 | NA | non-coding | downstream | 936993 | 20595470 ~ 20599545 (+) |
| G142397 | NA | non-coding | downstream | 986004 | 20644481 ~ 20644794 (+) |
| G142412 | NA | non-coding | downstream | 1087068 | 20745545 ~ 20749364 (+) |
| AMCG00003323 | rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 | other | upstream | 18026 | 19618881 ~ 19633150 (+) |
| G142172 | NA | other | upstream | 114085 | 19535693 ~ 19537091 (+) |
| G142078 | NA | other | upstream | 958972 | 18588574 ~ 18692204 (+) |
| AMCG00003291 | bbip1 | other | upstream | 1925795 | 17721244 ~ 17725381 (+) |
| G141962 | NA | other | upstream | 1972654 | 17676279 ~ 17678522 (+) |
