AMCG00003338


Basic Information

Item Value
gene id AMCG00003338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19895311 ~ 19900232 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003338
atggaaaacagGGGCGAAGTGACACAAAATCGCTACAGAAGCGCCCAGAGACGCCgccagaagagagagaaaacgaaAGCCAAAGAGTGGGGAGAGGACACAAAAGACATCCTCTACCTCATACTTTCCTATCTGGACTGCAAGGCTCTGAACAGCTTGTCCCAAGTTTGCAAGAAGATTTACTATTTCACCAGCAGGGATGCCGTTTGGAGGAGGATAGCGAAAGAGTGCATCAACACCGGAATAAACCGACAAGGAACAGACTTAATCCCCCTGAAGGACAGAGTGAAGGTCTCTCAGAACTGGCGTAGAGGCAAATGCAGAAGAGACGCTGTCCTAAAGTGGAAGAACAACTTGTTGCCATGGATACAGCTAGACAGCGGTGTGCTGTATCTGTCACAGGCGGCTGACATCAGAGTGTACCAACTGAGGGCCGATGGAGGGGGGCTTAAGCGGAAGCCAGTGGCTGTGTTTTCGGGACACCAAGAGGACGTGTGCCGATTTGTCCTGACAGACACGCATCTTGTCAGTGCTGGAGGAGATGGGAAGATCATTCTTCACCAGAGAAGGAGTTCCTTCAGTGTGGAGTTTTCTGCTCATAACCAGGAGGTGAACTGTATCGACAGCAAGGGAGGCATCATTGTCAGCGGCTCCCGGGACAGAACTGCTCGGGTTTGGTCGCTTTCCTCAAACAGGCTTGGAGAGTGTCTGCACACTATCCCCACCTTAGACAGAGTCTGGTCTGTAGCTATCAGTCCTTCACAA

Function

GO: NA

KEGG:

id description
K10262 FBXW4, SHFM3; F-box and WD-40 domain protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003338 True 765 mRNA 0.51 6 19895311 19900232

Neighbor

gene id symbol gene type direction distance location
AMCG00003334 NA coding downstream 27501 19863773 ~ 19867810 (-)
AMCG00003333 NA coding downstream 38445 19850325 ~ 19856866 (-)
AMCG00003335 NA coding downstream 47912 19829188 ~ 19847399 (-)
AMCG00003336 cnnm2,LOC107588659,LOC107673921,LOC107656926,LOC107585325,LOC107716327 coding downstream 133017 19747426 ~ 19762294 (-)
AMCG00003330 LOC106588656,LOC106564629,LOC105012231 coding downstream 188422 19699986 ~ 19706889 (-)
AMCG00003339 fgf8a,fgf8,LOC107673879,LOC107585369,LOC107716294,LOC107696243 coding upstream 10044 19910276 ~ 19929271 (-)
AMCG00003342 slc2a15a,LOC107716293,LOC107673883,LOC107696166,LOC107708408,LOC108442702,LOC103035008,LOC107585370 coding upstream 94787 19995019 ~ 20005313 (-)
AMCG00003341 fbxw11b,LOC106568099,LOC105893085,LOC107687420,LOC105905987 coding upstream 119626 20019858 ~ 20033589 (-)
AMCG00003344 tlx1,LOC107585374,LOC107588667,LOC107694453 coding upstream 259096 20159328 ~ 20165583 (-)
AMCG00003345 NA coding upstream 323591 20223823 ~ 20362586 (-)
G142200 NA non-coding downstream 296197 19597329 ~ 19599114 (-)
G142176 NA non-coding downstream 346379 19548641 ~ 19548932 (-)
G142090 NA non-coding downstream 1057826 18835540 ~ 18837485 (-)
G142066 NA non-coding downstream 1588628 18306362 ~ 18306683 (-)
G142064 NA non-coding downstream 1590333 18304631 ~ 18304978 (-)
G142348 NA non-coding upstream 280563 20180795 ~ 20181023 (-)
G142357 NA non-coding upstream 475154 20375386 ~ 20375626 (-)
G142404 NA non-coding upstream 754831 20655063 ~ 20669631 (-)
G142406 NA non-coding upstream 759380 20659612 ~ 20743604 (-)
G142417 NA non-coding upstream 857887 20758119 ~ 20758457 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 18549 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 325696 19543637 ~ 19569615 (-)
G141826 NA other downstream 3146880 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 4754492 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 5220891 14669415 ~ 14674420 (-)

Expression


Co-expression Network