AMCG00003340


Basic Information

Item Value
gene id AMCG00003340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 19955769 ~ 19977915 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003340
ATGAGGAAGAGGGACCAAGAGATCAAAATGAATGGCAACATCACAGATGCTAAGTCTCCAATCACCACGGAAAGTGCAAGAGATGTCACTGCAGCTCTATTGCCTTCAGGAAGTTCTCAAAGCCATCCCCACATTGGAATAGTGTCCATTACTAAAACCAACTGTCAACCAGAACCAGACCTTAGCGTGGAGCAAGCATCTGGTGATAATGAATATTGTAGAACTGGGCCCAGGCTAAGTAATCTGAGTGACAATCTCAATTATCCTGCCAAAGTATGGGACCTTGGAAACAAAGGGATCTTTGAGACCGAGCTGAAACCAGAAACCCGTGAAGGGCTTCTGGTCACTGCAACTCATTTTCCTCCGAAGTCAGGAGAGACTGAAGAAGAATGGAATGACAAGCTATACCCTACACATGGAAATGAAGTACCTTCAATTGTGGGGACCTTCAACTCTCCAACTGAGATGATACAGTCAGCCGTCAGCTATTCATCTGGCAATCTTTACAAGTGTGAAGGCATGAAACTAACGTATTCCACGAAGAATGAAGCAAGAAAGAAGGATGCTTATGTGCCAAACTGTGAATACAAGACCAGCGGTGGTAGTATCACTCCAAACGAGGAAGAAGAAAGCACTGAAATCATTCAGAATCATGACCTGGCACCAGAAGAAACTACGCCAGATGAAAGAAGAGAGATAGATTCCTCTCCAACTGTACATGCTGTTGCTGGAAGTTCAACAGTTGAAACTTCCCATGAAGATTCCTCTGCAGATGTTCAATTTAAAGCAGAAAGCCCAGTTGTTTGTGAATCCTCCAGTATTTGGGGATTTCATTCAGACACAGATATGTCAACTAACTCTCCTGAAGATTCAGCAGCCAACGAACAACCTGAAAGAACAGATGAGGAGGCTGAAGAAGAAGATGGAGCAGAAGAGGTGGCCAACCACAGAGGAGATGCTTTGATGTCTGAAAATGAGAAAACTAGGAGTGATGAAGTACATGGCCAACCCATGGCTCAAAGCCTTGAAGGAACAAGTGCTAACTCAAGACATGCGATTAGTGCGAACCAGAAGCAGTCTGTTTCTGAGACCTTCATCAAGCCGTCAGTCGAGGAGAAGAACGGGAGTCTTCAGAGGGAATACACGCACAGGTTTCTCGATTCTCTGAGGGAAGCATATCTACACACATATTCAAAGCACTACTTCTATTTGATGGATTCTGGACTGGTTCTCTCCAAGGCCAAGTCTGAGAAGTTTGATAATAAAGTCTTGGTCACTATGAGAGATGGTGTGAAGCTGGCCCTGACCCCATCCACATGCAGTGACTACAGGTACCAGAATAAGGGTAACTTCTGCATCATCCAAAAGCTGAATTCTTGCTGGTATAGGGGCATTGACCTGGGAACTAAGGAGAAGTTCCTCATTAAACAGGTCGAAGTGGTGAACAACTGGAGAAAGATTTTGCAGAACTTCCTGTTTCTTCCAAGCAGCCCCTTCATTCTGCTGCCATATGCAGTAATGACAGACAGGAATGGATTCATCTACTTCCTAATGCAAGACCAAGACATTAAAGAGAAAAAGAACACGTGTTCCTCCAAAGCTTCTAAGATCACCTTCCTCTTTTCCTCCTTGGGATTGCTGCgctggacagagacagagtgtgTAGCGAGTTGTGTGAGGCTGTGGAAGAAGAGATTGGAGAAGGGTAGTACAAGCTTCAAGAACAAACCCTGA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003340 True 1734 mRNA 0.45 6 19955769 19977915

Neighbor

gene id symbol gene type direction distance location
AMCG00003331 NA coding upstream 93128 19857380 ~ 19862641 (+)
AMCG00003332 NA coding upstream 132724 19819018 ~ 19823045 (+)
AMCG00003327 nt5c2 coding upstream 214689 19728276 ~ 19741080 (+)
AMCG00003329 NA coding upstream 227548 19710196 ~ 19728221 (+)
AMCG00003328 NA coding upstream 278362 19662084 ~ 19677407 (+)
AMCG00003343 lbx1a,lbx1,LOC107585373,LOC107716305 coding downstream 148229 20126144 ~ 20127556 (+)
AMCG00003349 slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140 coding downstream 425781 20403696 ~ 20408684 (+)
AMCG00003348 NA coding downstream 514444 20492359 ~ 20593500 (+)
AMCG00003351 morn4,LOC107719210 coding downstream 782405 20760320 ~ 20764685 (+)
AMCG00003359 NA coding downstream 1173936 21151851 ~ 21177530 (+)
G142205 NA non-coding upstream 339202 19616261 ~ 19616567 (+)
G142194 NA non-coding upstream 361502 19593878 ~ 19594267 (+)
G142174 NA non-coding upstream 414522 19541042 ~ 19541247 (+)
G142170 NA non-coding upstream 423902 19531412 ~ 19531867 (+)
G142146 NA non-coding upstream 442637 19512483 ~ 19513132 (+)
G142340 NA non-coding downstream 150452 20128367 ~ 20128715 (+)
G142354 NA non-coding downstream 296418 20274333 ~ 20274616 (+)
G142376 NA non-coding downstream 617555 20595470 ~ 20599545 (+)
G142397 NA non-coding downstream 666566 20644481 ~ 20644794 (+)
G142412 NA non-coding downstream 767630 20745545 ~ 20749364 (+)
AMCG00003324 NA other upstream 297292 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 322619 19618881 ~ 19633150 (+)
G142172 NA other upstream 418678 19535693 ~ 19537091 (+)
G142078 NA other upstream 1263565 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 2230388 17721244 ~ 17725381 (+)

Expression


Co-expression Network