AMCG00003344 (tlx1,LOC107585374,LOC107588667,LOC107694453)


Basic Information

Item Value
gene id AMCG00003344
gene name tlx1,LOC107585374,LOC107588667,LOC107694453
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20159328 ~ 20165583 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003344
ATGGATCATATAGGGGCCCATCACATCCACCAAACCCACGCAGAGCCCATCAGTTTTGGAATCGATCAAATCTTGAACAATCCGGATCAGGGGAGTTGCATGATCTCCAACTCTAGGCTGCAAGATTCCGACTATGGCTTGGGATGCATCGTGAGCAGCGCCTACAATACGATGACTGGCAACTACAATACCAGCAATACTATGGGATACAATAGCAGCGCCTGTAGCATGGCATCGTTGAATGGGTCTTACAATGTGAACATGGGCATGAATATGAATGGGAATAACCTGAATTCGGCAGGGGTGATTCGGGTGCCAGCTCACAGACCGCTAGGTAGCGTTCACCAGCCAATTTCCACCGGTATGCCTACGGTGCCAAGTATGGGCAGCATGAACAGTATGAATAATCTCACGGGACTCACTTTTCCCTGGATGGAAAGTAACAGAAGATACACGAAAGACAGATTTACAGTGGCACTCTCACCCTTCACTGTAACACGCCGTATAGGTCACCCGTACCAGAACCGGACGCCCCCAAAGAAGAAAAAGCCCAGGACCTCCTTCACCCGGCTCCAGATCTGTGAGCTGGAAAAAAGGTTTCACCGGCAGAAGTACTTAGCGTCTGCCGAAAGGGCGGCCCTGGCAAAGGCACTTAAAATGACAGATGCCCAGGTCAAAACATGGTTCCAGAATAGAAGGACAAAATGGAGGCGACAGACTgcggaggagagggaggcagagcgGCAGCAGGCCAATCGGATCCTGATGCAACTGCAGCAAGAAGCCTTCCAGAAAACGTTGAACCAGCCGGTGCAGCCGGACCCCCTCTGCCTTCACAACACGTCCCTGTTTGCTCTGCAGAACCTGCAACCCTGGACTGACGACACGTCCAAAATCACAAGCGTCACGTCCATCGCGTCCTCCTGCGAATAG

Function

symbol description
tlx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in spleen. Human ortholog(s) of this gene implicated in adult T-cell leukemia. Orthologous to human TLX1 (T cell leukemia homeobox 1).

NR:

description
PREDICTED: T-cell leukemia homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003344 True 933 mRNA 0.52 3 20159328 20165583

Neighbor

gene id symbol gene type direction distance location
AMCG00003341 fbxw11b,LOC106568099,LOC105893085,LOC107687420,LOC105905987 coding downstream 125739 20019858 ~ 20033589 (-)
AMCG00003342 slc2a15a,LOC107716293,LOC107673883,LOC107696166,LOC107708408,LOC108442702,LOC103035008,LOC107585370 coding downstream 154015 19995019 ~ 20005313 (-)
AMCG00003339 fgf8a,fgf8,LOC107673879,LOC107585369,LOC107716294,LOC107696243 coding downstream 230057 19910276 ~ 19929271 (-)
AMCG00003338 NA coding downstream 259096 19895311 ~ 19900232 (-)
AMCG00003334 NA coding downstream 291518 19863773 ~ 19867810 (-)
AMCG00003345 NA coding upstream 58240 20223823 ~ 20362586 (-)
AMCG00003347 NA coding upstream 436169 20601752 ~ 20604005 (-)
AMCG00003346 NA coding upstream 457820 20623403 ~ 20629596 (-)
AMCG00003350 LOC106532717 coding upstream 610996 20776579 ~ 20796389 (-)
AMCG00003353 NA coding upstream 725168 20890751 ~ 20892570 (-)
G142200 NA non-coding downstream 560214 19597329 ~ 19599114 (-)
G142176 NA non-coding downstream 610396 19548641 ~ 19548932 (-)
G142090 NA non-coding downstream 1321843 18835540 ~ 18837485 (-)
G142066 NA non-coding downstream 1852645 18306362 ~ 18306683 (-)
G142064 NA non-coding downstream 1854350 18304631 ~ 18304978 (-)
G142348 NA non-coding upstream 15212 20180795 ~ 20181023 (-)
G142357 NA non-coding upstream 209803 20375386 ~ 20375626 (-)
G142404 NA non-coding upstream 489480 20655063 ~ 20669631 (-)
G142406 NA non-coding upstream 494029 20659612 ~ 20743604 (-)
G142417 NA non-coding upstream 592536 20758119 ~ 20758457 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 282566 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 589713 19543637 ~ 19569615 (-)
G141826 NA other downstream 3410897 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 5018509 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 5484908 14669415 ~ 14674420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006660 tlx1 coding NC_007124.7 CM002897.2 28267997 ~ 28272299 (-)
grasscarp (Ctenopharyngodon idella) CI01000012_10489814_10496226 TLX1, TLX1.L coding CI01000012 null 10489727 ~ 10496584 (+)