AMCG00003345


Basic Information

Item Value
gene id AMCG00003345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20223823 ~ 20362586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003345
ATGGGGGAGATCATAGCAGTCCAGAAACGTTGTGCTCTAGAGATCATCTTGAAGATATTGTATCAAACGCAGCTGGCCTGGGCAGTCCCCAGTGTCCCAGAATACCTGCAGCGTGGCTGGCAGAGGCTACTGGAGGAAGGTGAAAGCTGTGCAGACTGTCAGCCACAGGACTGTCCCCTTCCACGCGGGTGTCTGGCCGGGGTGGTGATGGACCACTGTGACTGCTGCAGGGAATGTGCCAACCTGGAGGGGCAAATCTGCGACCTGGACAACACTAACCACTTCTATGGAAAGTGTGGGGCGAATCTGGAGTGCAGGCTGGACATGGGTGACCTGCGGGAGGGGGAGGTGCCCGAGCCACAGTGCATCTGCGTCTCCAACAAAGCTGTGTGTGGCTCAGATGGAAAGACCTACCCTCAGATCTGCAAGTTCCAGGAAGCAGCTAATGCCAGGCCTGATATGAAGCTCAAACTTTCCCATGAAGGGCCGTGCGAAGCAGCCCCCAACATCATATCACCACCTTACGACATATGGAACGTGACAGGGGAGGATGTCATTTTTGGCTGTGAGGTTTTCGCCTACCCCATGGCCTCCATTGAGTGGAGGAAAGATGGAATGGAAATGTTTCTCCCTGGAGATGATCCCCATATCTCAGTCCAGTTCAGGGGTGGCCCACAGAAGTATGAGGTCTCGGGCTGGCTTCAGATCCAGAAAATTCGCCTTGCTGATGAGGGGACCTACCACTGCTTTGCCAGAAACAGGCATGGAGAAGTCACCGCAACTGCCAGTCTGACAGTGATCACTCCAGCTGCACTGGCTCAGGAGGTAAGTTGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003345 True 834 mRNA 0.55 6 20223823 20362586

Neighbor

gene id symbol gene type direction distance location
AMCG00003344 tlx1,LOC107585374,LOC107588667,LOC107694453 coding downstream 58240 20159328 ~ 20165583 (-)
AMCG00003341 fbxw11b,LOC106568099,LOC105893085,LOC107687420,LOC105905987 coding downstream 190234 20019858 ~ 20033589 (-)
AMCG00003342 slc2a15a,LOC107716293,LOC107673883,LOC107696166,LOC107708408,LOC108442702,LOC103035008,LOC107585370 coding downstream 218510 19995019 ~ 20005313 (-)
AMCG00003339 fgf8a,fgf8,LOC107673879,LOC107585369,LOC107716294,LOC107696243 coding downstream 294552 19910276 ~ 19929271 (-)
AMCG00003338 NA coding downstream 323591 19895311 ~ 19900232 (-)
AMCG00003347 NA coding upstream 239166 20601752 ~ 20604005 (-)
AMCG00003346 NA coding upstream 260817 20623403 ~ 20629596 (-)
AMCG00003350 LOC106532717 coding upstream 413993 20776579 ~ 20796389 (-)
AMCG00003353 NA coding upstream 528165 20890751 ~ 20892570 (-)
AMCG00003354 NA coding upstream 545094 20907680 ~ 20912693 (-)
G142348 NA non-coding downstream 42800 20180795 ~ 20181023 (-)
G142200 NA non-coding downstream 624709 19597329 ~ 19599114 (-)
G142176 NA non-coding downstream 674891 19548641 ~ 19548932 (-)
G142090 NA non-coding downstream 1386338 18835540 ~ 18837485 (-)
G142066 NA non-coding downstream 1917140 18306362 ~ 18306683 (-)
G142357 NA non-coding upstream 12800 20375386 ~ 20375626 (-)
G142404 NA non-coding upstream 292477 20655063 ~ 20669631 (-)
G142406 NA non-coding upstream 297026 20659612 ~ 20743604 (-)
G142417 NA non-coding upstream 395533 20758119 ~ 20758457 (-)
G142418 NA non-coding upstream 401958 20764544 ~ 20766330 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 347061 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 654208 19543637 ~ 19569615 (-)
G141826 NA other downstream 3475392 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 5083004 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 5549403 14669415 ~ 14674420 (-)

Expression


Co-expression Network