AMCG00003346


Basic Information

Item Value
gene id AMCG00003346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20623403 ~ 20629596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003346
GGAGTACTTGATCTGTCAACTAAAAAAAGTCCCAGTGCAGGCGGCAGTACATCCCTCAGCAACTCTCCTGGATGTTCAACAGCTCCTGTGGGCAAAGgGCGTCCAGGGAGAGCTGACCACAACTATCGAGACGGACATTGCCGAGATGTGGACGGGCTGCCTCCAAGAAGCTTGCAGGACGGGATGAGAGAGAATTACGGCCACTCCACCCCTCTTAAGCCTCCTCTAGCTCACTCGTTGCAGATCAAAGAGGAGCTGCTTAACCGGAAACAGCATCTGCACCAACCGCCAGTCTCTCTGTCCAGCCTAGAGTCGGTAGGCCTGCTTAACCACGGACAGCACTCTGTTCTCTCCAGAGAAGGTTCATGGAGTAAACCGCATTTTGACAACCACCTGAAATTCAAGGCAAACAGTGCACTTAATGACCTGAAGGACCTTCCCTTTCTCTTGGAGAACTCTGTTGCATTTTCGAAAGGTCCCACCCAGATGAAGTTGCAGGAGGGGAAAAGAGATCACGGGCACTCTGCTCCAGTGGATCTGAAAATTCCCCAGGTCCGAGGCATGGATCTGTCCTGGGATTCCCATGCCTCTGACCTTTATGGCTATGGGTCATTGGTGGTGGGCCCTCACTCTGAAAATGCACTCAGCAAGAAGCTGCGGGCCATCCTTCCCAAGCAGAGCAGGAGGGGGGGTGTGGGGGCCATCCTGGATGGGGGACCAGATTTCTGGGGGTCCGATGTAGAACAGTCAACTTCTGGACATCAGTACCCAACCTCTGACCCTGAAGGAGACCCTAACTCGAAACAGCCCCGGAAGAAACGGGGACGTTACCGGCAGTATAACAGTGAAATTCTTGAGGAGGCGATCTCTGTGGTGATGAATGGGAAGATGAGCGTGTCAAAGGCACAGAACATTTATGGGATTCCCCACAGCACTCTGGAGTACAAAGTCAAAGAGAGGCTAGGAACATTGAAAAACCctccaaagaaaaaaatgaaactgatgaGGATGGAAGGGCAGGAAGTGGTGGCTGAAGGTGATCCTTCCCCCCGTGGGGAAGGGTCACAGGCAACAAGCGATTTGAAAGACGag

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003346 True 1092 mRNA 0.53 2 20623403 20629596

Neighbor

gene id symbol gene type direction distance location
AMCG00003347 NA coding downstream 19398 20601752 ~ 20604005 (-)
AMCG00003345 NA coding downstream 260817 20223823 ~ 20362586 (-)
AMCG00003344 tlx1,LOC107585374,LOC107588667,LOC107694453 coding downstream 457820 20159328 ~ 20165583 (-)
AMCG00003341 fbxw11b,LOC106568099,LOC105893085,LOC107687420,LOC105905987 coding downstream 589814 20019858 ~ 20033589 (-)
AMCG00003342 slc2a15a,LOC107716293,LOC107673883,LOC107696166,LOC107708408,LOC108442702,LOC103035008,LOC107585370 coding downstream 618090 19995019 ~ 20005313 (-)
AMCG00003350 LOC106532717 coding upstream 146983 20776579 ~ 20796389 (-)
AMCG00003353 NA coding upstream 261155 20890751 ~ 20892570 (-)
AMCG00003354 NA coding upstream 278084 20907680 ~ 20912693 (-)
AMCG00003352 NA coding upstream 313160 20942756 ~ 20945804 (-)
AMCG00003355 abcc2,LOC103476915,LOC102299438,LOC101468212 coding upstream 362889 20992485 ~ 20996275 (-)
G142357 NA non-coding downstream 247777 20375386 ~ 20375626 (-)
G142348 NA non-coding downstream 442380 20180795 ~ 20181023 (-)
G142200 NA non-coding downstream 1024289 19597329 ~ 19599114 (-)
G142176 NA non-coding downstream 1074471 19548641 ~ 19548932 (-)
G142090 NA non-coding downstream 1785918 18835540 ~ 18837485 (-)
G142404 NA non-coding upstream 25467 20655063 ~ 20669631 (-)
G142406 NA non-coding upstream 30016 20659612 ~ 20743604 (-)
G142417 NA non-coding upstream 128523 20758119 ~ 20758457 (-)
G142418 NA non-coding upstream 134948 20764544 ~ 20766330 (-)
G142420 NA non-coding upstream 137758 20767354 ~ 20767630 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 746641 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 1053788 19543637 ~ 19569615 (-)
G141826 NA other downstream 3874972 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 5482584 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 5948983 14669415 ~ 14674420 (-)

Expression


Co-expression Network