AMCG00003348


Basic Information

Item Value
gene id AMCG00003348
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20492359 ~ 20593500 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003348
GAGCCACAATTACCCCCCCGCTATGCCAGGGCCTAATCCAGTCAAACTCACATGGCCAGGGGAGGTGTCCCAGTCCCTGGATCTGAGTGAGAACTTCATCCAGGCCATTCCCAGGAAGGCTTTCCGTGGAGCCACTGATATCAAGAACCTTCAGCTGGACAAAAACCACATCACTTGCATTGAGGATGGGGCATTCCGGGCTTTGAGAGGGCTGGAGGTGCTCCGTCTTCACTCCAACAACCTGAACTGTGACTGCCACCTGTCCTGGCTGTCTCAGTGGCTGCGTCAGAGGCCCACAATTGGGCTGTTCACTCAGTGCAGCGCCCCCGTCCAGCTCAAAGGGCTCAATGTTGCTGAAATCCAAAAACATGAGTTCAGCTGCTCAGGTCATGTGGAGGCTGCGGTGCTGCAGCCCTGTAGCCTCGCTGCCGGCTCCTGCCCAGCTATGTGTACCTGCAGCAACAACATTGTGGACTGCCGTGGTAAAGGCCTCATTGCCATCCCCGCCAACCTGCCTGACAGCATGGCTGAAATACGCTTGGAGCAGAATGGGATCAAGTCTGTCCCTCCTGGAGCCTTCTCCCCATACAAGAAACTCCGGAGAATAGACCTCAGCAACAACCAGATCTCAGAGATTGCCCCAGATGCATTTCAGGGCCTACGCTCCCTCAACTCCCTggTCCTGTATGGAAATAAAATCACTGAACTGCCCAAAGGTGTGTTTGATGGACTATACGCCCTACAGCTGTTACTGCTTAATGCCAATAAGATCCACTGTGTCCGTGCTGATGCATTCCAGGACCTGCAGAACCTGTCCCTGCTTTCCCTGTATGACAATAAGATCCAGACTCTGGCCAAGGGCACTTTCACTGCTCTGCGCGCAGTACAGACATTGCATTTGGCACAGAACCCCTTTATCTGTGACTGTAACCTGAAGTGGCTGGCAGACTACCTGCGCTCCAACCCCATTGAGACCAGTGGGGCACGCTGTGCCAGCCCACGCCGCCTTGCCAACAAGCGCATTGGTCAGATCAAGAGCAAGAAGTTCCGTTGCTCCGCTAAGGAGCAGCGCCTGAACGGGAATGAGATTTCAGTCTTGGAGGCTACTGGTGTCTTTAAAACACTCTCTCAGCTAAAGAAAATTAACCTGAGCAACAACAAGATAGCGGAGATTGAGGATGGAGCATTCGAGGGGGCCTCTTCCGTCAATGAGCTGCACCTGACTGCCAACCAGATGCTCCGAAACAATCGCATCAGTTGCATCCACAACAACAGCTTCACAGGACTGTACAATGTGCGCCTGCTGTCCCTCTATGACAACCATCTCACCACCATTACCCCAGGGGCTTTCGACACTCTGCAAACTCTATCTACTCTAAGCCACAAGATTGTGACTGGCAACCCCAGGTGCCAGCGCCCTGCCTTCCTCAAAGAGATCCCCCTCCAGGATGTGGCATTGCCTGACTTCCGTTGTGAGGAGGgTCAGGAGGAGGCTAGCTGTGTACCACGCCCCCAGTGTCCCAGCGAGTGCACCTGCTTGGAGACCGTAGTGCGCTGCAGCAACAAACATCTGCGGACTCTGCCCAGAGGCATCCCCAGGAATGTCACCGAGCTGTACCTAGATGGAAACCAATTCAGCATGGTGCCTAGAGAGCTGTCCACCTTCAAATACCTTCAGCTTGTagACTTGAGTAACAACAAGATCAGCTCCCTTACCAACTCCTCCTTTGCTAACATGAGCCAGCTAACTACATTGATCCTGAGCTACAATGCCCTGCGCTGCATACCCAGCTTGGCCTTCGGAGGACTGCGTTCCCTCAGACTGCTCTCTCTCCATGGCAATGACATCTCAGAACTGCCAGACGGCATCTTCAGCGATGTGGCCTCTCTGTCACACCTTGCAATTGGAGCCAACCCACTTTACTGTGACTGTCGTCTGCGCTGGCTGTCTGACTGGGTGAAGACTGGCTACAAGGAGCCTGGCATTGCCCGCTGCACTGGACCACTGGGCATGGAGAGCAAATTGCTGCTGACCACTCCAGCTAAGAAGTTTGAGTGCCAGGGCTCTGTAGATCCAGCAGTCCTGGCCAAGTGCAGCCCGTGTCTGTCTAGCCCCTGTCAGAATGAGGGCAGCTGTCAGACTGATCTGCTGGATGTCTTCAAATGTACCTGTGCTCCTGGATTCAAGGGGAAGAACTGTGAAACAGCCCAGAATGCTTGTGTCAGTAATCCATGTGCCAATGGGGGCACTTGCCAAGTGAACCCAGAGGACAGTGGGGGCTTCAGttGCTCCTGTGCTCAGGGTTTTGTGGGCACCACCTGTGAGCTAAATGTGGATGATTGTGAGGATAATTGCGAGAACGGAGGAACTTGCGTTGATGGAGTCAACAATTACACCTGCCTGTGCCCCCCCTTCTACACAGGAGAGCTGTGTGAGGACCTGGAGGATGTgtgTGCCTGCGCTCCTGGCTTTGTGGGCGATGACTGCAGTGTGGACTATGATGACTGTGCAGGGCACCGCTGTCAGAACAGCGCACAATGTGTTGATGAAACCAATGGctacttgtgtgtctgtgctgaagGCTTCAGCGGTCAGCTGTGTGAGGTGCCCACAGCCTCACACTCCCAGTGTGACCTAGTAGAGTGTCAGAATGGTGCCCCCTGTGTAGAGCGGGGCGGCAGGGCCCTGTGCCAGTGTCTGCCTGGCTTTGGGGGACCTCGGTGCGAAAAACTTGTCAGTGTCAACTTCGTGGACAGAGATTCCTACCTGCAGCTGAGCGACCTGAAGAACTGGCCTCAAGCAAACATCACATTGCAGgTGTCCACAGCCGAGGACAATGGAATTCTACTATATAACGGAGACAATGATCACATCGCAGTGGAGCTGTACCAGGGTCATGTCAGGGTCAGCTATGATCCCGGCAGCCAGCCCAGCAGTGCCATCTACAGcactGAGACCATTAACGATGGCCAGTTCCACACAGTAGAGCTGGTGACCTTTAACCAGATGGTGAATCTGTCCATCGACGGGGGAGTCCCGATGACTATGGACAGTTTTGGAAAGCTGCAGCCCCTGAATGGAGAGGCTCCGCTATACGTGGGGGGAATGCCAGTGGATGTCAACTCAGCCGCCTTCCGCCTCTGGCAGATCCACAATGGTTCCAGCTTCCATGGCTGCATCCAGAACCTGTACATCAACAACGAGCTGCAGGACTTCACCAAGACACAGATGAAGCCGGGCGTGGTACCGGGCTGTGAGCCCTGCCGCAAGATCTACTGTCTGCATGGCATCTGCCAGCCCGATGGAGCCACCGGGCCTGTGTGCCACTGCCAGCCAGGCTGGAGCGGCCTGCACTGCGATCAGCCAGCCAGCAACCCCTGCCAGGGCAGCAAgtgCGTCAATGGGAAGTGTGTGCCCCTGGATGCACAGTCATATCGCTGCGAGTGTCAGGAAGGATACCGTGGTGCCCTGTGCAACCAGCAGGGGGAGCTATTCAACCCTTGCAAGAGGCTACATTGTAAACACGGACGCTGCCAGATCTCAGATGCAGGAGATTCTTACTGCCACTGTGATGGCGGCTACAGTGGGGAGCTGTGTGACACAGAGTCAGAATGCCGTGGGGAGCCAGTGAGGGACTTCTATCAGGTGCAGCGCGGGTACACCATCTGCCAGAGCACGCGCCCGGTGTCCTGGGTAGAGTGCAGTGGGGCCTGTGACACAGGAGCTTGCTGCACCCGTCAGAGGATGAAGCGCCGGAGATACACATTTGAGTGCAGTGACGGCACCTCCTTCACTGAGGATGATATTCTACACAAGCCTGTGCCAGGTGCATGTGTGGGTCCTGAATTTCTAAGgCTTTTCctgatt

Function

GO: NA

KEGG:

id description
K06838 SLIT1; slit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003348 True 3868 mRNA 0.55 34 20492359 20593500

Neighbor

gene id symbol gene type direction distance location
AMCG00003349 slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140 coding upstream 83675 20403696 ~ 20408684 (+)
AMCG00003343 lbx1a,lbx1,LOC107585373,LOC107716305 coding upstream 364803 20126144 ~ 20127556 (+)
AMCG00003340 NA coding upstream 514444 19955769 ~ 19977915 (+)
AMCG00003331 NA coding upstream 629718 19857380 ~ 19862641 (+)
AMCG00003332 NA coding upstream 669314 19819018 ~ 19823045 (+)
AMCG00003351 morn4,LOC107719210 coding downstream 166820 20760320 ~ 20764685 (+)
AMCG00003359 NA coding downstream 558351 21151851 ~ 21177530 (+)
AMCG00003361 NA coding downstream 932137 21525637 ~ 21748601 (+)
AMCG00003363 NA coding downstream 1159846 21753346 ~ 21755934 (+)
AMCG00003370 NA coding downstream 1452813 22046313 ~ 22067314 (+)
G142354 NA non-coding upstream 217743 20274333 ~ 20274616 (+)
G142340 NA non-coding upstream 363644 20128367 ~ 20128715 (+)
G142205 NA non-coding upstream 875792 19616261 ~ 19616567 (+)
G142194 NA non-coding upstream 898092 19593878 ~ 19594267 (+)
G142174 NA non-coding upstream 951112 19541042 ~ 19541247 (+)
G142376 NA non-coding downstream 1970 20595470 ~ 20599545 (+)
G142397 NA non-coding downstream 50981 20644481 ~ 20644794 (+)
G142412 NA non-coding downstream 152045 20745545 ~ 20749364 (+)
G142419 NA non-coding downstream 173854 20767354 ~ 20771779 (+)
G142482 NA non-coding downstream 510320 21103820 ~ 21143131 (+)
AMCG00003324 NA other upstream 833882 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 859209 19618881 ~ 19633150 (+)
G142172 NA other upstream 955268 19535693 ~ 19537091 (+)
G142078 NA other upstream 1800155 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 2766978 17721244 ~ 17725381 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006336 slit1a coding NC_007124.7 CM002897.2 555321 ~ 638485 (-)