AMCG00003349 (slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140)


Basic Information

Item Value
gene id AMCG00003349
gene name slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20403696 ~ 20408684 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003349
ATGGGACTTGGGGGGGAAATGGTTATACAGCTGAAAACCACTTCggggaaggaggagaggagtgGAGGGGAGGGgGAGCTGAATGGAAATAACATCACGCGCATCAACAAGAATGACTTTTCTGGACTGAAGTACCTCAGAGTCTTGCAGTTGATGGAAAACCAGATTGGGACCATCGAGAGAGGAGCTTTTGATGACAtgaaggagctggagagactTCGGCTGAATCGTAACCAGCTTCACCAGCTTCCGGAGCTGCTGTTCCAGAAGAATGCTGCTCTCTCCCGACTGTGA

Function

symbol description
slit1 Enables Roundabout binding activity. Involved in axon extension involved in axon guidance; motor neuron axon guidance; and negative chemotaxis. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: slit homolog 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003349 True 294 mRNA 0.51 4 20403696 20408684

Neighbor

gene id symbol gene type direction distance location
AMCG00003343 lbx1a,lbx1,LOC107585373,LOC107716305 coding upstream 276140 20126144 ~ 20127556 (+)
AMCG00003340 NA coding upstream 425781 19955769 ~ 19977915 (+)
AMCG00003331 NA coding upstream 541055 19857380 ~ 19862641 (+)
AMCG00003332 NA coding upstream 580651 19819018 ~ 19823045 (+)
AMCG00003327 nt5c2 coding upstream 662616 19728276 ~ 19741080 (+)
AMCG00003348 NA coding downstream 83675 20492359 ~ 20593500 (+)
AMCG00003351 morn4,LOC107719210 coding downstream 351636 20760320 ~ 20764685 (+)
AMCG00003359 NA coding downstream 743167 21151851 ~ 21177530 (+)
AMCG00003361 NA coding downstream 1116953 21525637 ~ 21748601 (+)
AMCG00003363 NA coding downstream 1344662 21753346 ~ 21755934 (+)
G142354 NA non-coding upstream 129080 20274333 ~ 20274616 (+)
G142340 NA non-coding upstream 274981 20128367 ~ 20128715 (+)
G142205 NA non-coding upstream 787129 19616261 ~ 19616567 (+)
G142194 NA non-coding upstream 809429 19593878 ~ 19594267 (+)
G142174 NA non-coding upstream 862449 19541042 ~ 19541247 (+)
G142376 NA non-coding downstream 186786 20595470 ~ 20599545 (+)
G142397 NA non-coding downstream 235797 20644481 ~ 20644794 (+)
G142412 NA non-coding downstream 336861 20745545 ~ 20749364 (+)
G142419 NA non-coding downstream 358670 20767354 ~ 20771779 (+)
G142482 NA non-coding downstream 695136 21103820 ~ 21143131 (+)
AMCG00003324 NA other upstream 745219 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 770546 19618881 ~ 19633150 (+)
G142172 NA other upstream 866605 19535693 ~ 19537091 (+)
G142078 NA other upstream 1711492 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 2678315 17721244 ~ 17725381 (+)

Expression


Co-expression Network