AMCG00003350 (LOC106532717)


Basic Information

Item Value
gene id AMCG00003350
gene name LOC106532717
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20776579 ~ 20796389 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003350
CAAGTGTAATATCCTCCGTAGATGGGccgatgttttttttttccacagccaTGCTGTCCTAAGATCTGTCTCTGAATCTCGAGTCGTGATTAACATTCTCATTACGTACTTAATTGTAATATGCTAACTATAAACGTGTAAGCTAAAACTTCAGAATGCAGGTGTTAGAAAATAAAACGCGTAACGTGTGTAGCAAATGTTGTATACATTAGTTGCCTACAGAAAGTTGCTCACTGAAGTTGAGATTTTTATTAAGAGCAGTTTTAGTATTGGTTGATTTGAAGTGTTCTaatcaaatatacaaaaatagcactcagaaaaagaaaaaaacaacttatcAGATGCTCTGTCAATATTTAAAGAGTGTGTTATTGATTAACTATAAGACTGCTTGTTTCAGCTGGAATACAAGACGGACAGAAATCAAACTCACGGAGACAATGTTTGGGATCAGGCTTTTAATTTTGGGAAGAAAATGCAGAAGCACCATGGGGCTGTGGAAGCGAAGCCAGTACCACACCTCTGGCCAGACAATGGATATTGGTGGAATTTACCCCCCTATCGCCACACCGTTTGCTAGGAACGAACAGGTGGATTTTCAGAAacttgaggaaaacctgttgAAATATGCAAAGATACCATTCAGAGGGCTGGTGGTCCAGGGCTCCAACGGGGAGTATCCCTACCTGACGAGTGAGGAGCGCGTGGAGGTCGTGCGCAGGGTGAGACAGAGCCTTCCCAAAGACAAGCTGCTGATGGCAGGCTCCGGGTGTGAGTCATCCATGGGAACCGTGCTGCTGAGTGAGAGGATGGCAAAGAGTGGGGCTGATGTGGTGGCAGATGCCTGCCCAGTGCCAGTGGTTCTCTACAGTGTTCCTGGAAACACTGGGCTGGACCTGCCTGTGGAGGCCATTCTCACACTCTCACAGCACCCCAACATTGTGGGGCTAAAGGATAGCGGTGGTGATATAACAAGAATTGCCCTGATCATTCACAAAACACGAAAGGAGGATTTCCAAGTGCTGGCAGGGTCAGCTGGATTCCTGTTGGCTGCCTACTCTGTAGGTGCAGTTGGGGGGGTTTGTGCACTGGCGAACATCCTTGGGCAGCAGGTGTGCCAGCTTCAGCAGCTCTGTCTGGCTGGTCAGTGGGAAGAAGCCAGAGATCTACAGTACCGGCTAATTGAACCCAACACTGCATTTGGGATTGCCGCTCTGAAGCAGGCCATGGAGTGGTTTGGTTACCATGGCGGGGAATGCCGCTCCCCCCTGCAGCCGCTCTCTGAGGCTGAGAGCCAGCAGCTCCATCTCCATTTCTCTTCTAATGGATGGCTGTGA

Function

NR:

description
PREDICTED: 4-hydroxy-2-oxoglutarate aldolase, mitochondrial-like, partial

GO:

id name namespace
GO:0009436 glyoxylate catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008700 4-hydroxy-2-oxoglutarate aldolase activity molecular_function

KEGG:

id description
K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003350 True 1337 mRNA 0.48 7 20776579 20796389

Neighbor

gene id symbol gene type direction distance location
AMCG00003346 NA coding downstream 146983 20623403 ~ 20629596 (-)
AMCG00003347 NA coding downstream 172574 20601752 ~ 20604005 (-)
AMCG00003345 NA coding downstream 413993 20223823 ~ 20362586 (-)
AMCG00003344 tlx1,LOC107585374,LOC107588667,LOC107694453 coding downstream 610996 20159328 ~ 20165583 (-)
AMCG00003341 fbxw11b,LOC106568099,LOC105893085,LOC107687420,LOC105905987 coding downstream 742990 20019858 ~ 20033589 (-)
AMCG00003353 NA coding upstream 94362 20890751 ~ 20892570 (-)
AMCG00003354 NA coding upstream 111291 20907680 ~ 20912693 (-)
AMCG00003352 NA coding upstream 146367 20942756 ~ 20945804 (-)
AMCG00003355 abcc2,LOC103476915,LOC102299438,LOC101468212 coding upstream 196096 20992485 ~ 20996275 (-)
AMCG00003356 abcc2,LOC102299438,LOC100708777 coding upstream 229068 21025457 ~ 21043333 (-)
G142421 NA non-coding downstream 4784 20770723 ~ 20771795 (-)
G142420 NA non-coding downstream 8949 20767354 ~ 20767630 (-)
G142418 NA non-coding downstream 10249 20764544 ~ 20766330 (-)
G142417 NA non-coding downstream 18122 20758119 ~ 20758457 (-)
G142406 NA non-coding downstream 32975 20659612 ~ 20743604 (-)
G142433 NA non-coding upstream 13569 20809958 ~ 20810651 (-)
G142439 NA non-coding upstream 16684 20813073 ~ 20813646 (-)
G142440 NA non-coding upstream 18510 20814899 ~ 20815198 (-)
G142531 NA non-coding upstream 379955 21176344 ~ 21213391 (-)
G142533 NA non-coding upstream 451154 21247543 ~ 21248434 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 899817 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 1206964 19543637 ~ 19569615 (-)
G141826 NA other downstream 4028148 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 5635760 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 6102159 14669415 ~ 14674420 (-)

Expression


Co-expression Network