AMCG00003359


Basic Information

Item Value
gene id AMCG00003359
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21151851 ~ 21177530 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003359
AATTGCAATATATCGGTCACATTGAGCTGAGTTGTTATACGAGGTAAGGTTTGTAAGAGTACCATCAATTCACATTGAATTCAATGTAAACGATTGTACCTCTGTGTGATAGTTAATATTATAAAGAGATGTTGCTCCCAACTTTGCGATCCTTGGTAACGTGTGCCTGTCGGACGGCAGGCAACGGGTTACAACTGAGGAACAGTGTACAGCAGCGAGCTCCATGGAGGCAGTTTGTGGTGAAGAGGGGACACAGCTCAGTGGTGGCTGAGACTGGAGTCCCATCAGGGGCAGCCATGGGCTCTGTCCCAAATGCTGCCACCAACAGAATTGTGGGTCGTTGGCTGGTGGCCTGTAGTGGGATGGTGGTGGGAGCTGTTGTACTGGGAGGAGTCACCAGGCTGACGGAGTCTGGGCTGTCTATGGTCGACTGGCACCTGATCAAAGAAATGAAGCCGCCAAGAACCCAGGCAGAGTGGGAGGCAGAGTTTCAGAAGTACCAGCAGTTCCCAGAGTTTAAAATTTTGAACCATGACATGACCCTGCCCGAATTCAAATTCATCTGGTACATGGAGTACTCTCACCGCATGTGGGGACGACTAGTGGGGCTGGCCTACATTCTCCCCGCTGCCTACTTCTGGAGACGGGGATATCTGAACCGCACCATGAAGGGCTGTGTCCTGGGGCTCTGCGGCTTTGTCTGCTTCCAGGGTCTACTGGGCTGGTACATGGTGAAGAGTGGGCTGGAGGAGAACCCGAACTCCTTTGATGTCCCACGAGTCAGTCAGTACCGGTTGGCTGCTCATTTGGGCTCTGCACTGCTACTGTATTGCGCCAGCCTGTGGGCAGGCCTGTCACTGATGCTGAAGCCACACAAGCTGCCTGACACGCATCAGATAACCCTGCTAAGGAGGTTTGCCAGGGGCACTGGGAGCCTCGTCTTCCTCACTGCTCTCTCGGGGGCCTTTGTAGCAGGATTGGATGCAGGGCTGGTCTACAACTCCTTCCCTAAGATGGGGGAGCGCTGGATCCCTGATGACATCCTGGCTTTCTCACCTGCTGTCAAGAACTTCTTTGAGAACCCCACCACTGTCCAGTTTGATCATCGAATTCTGGGTATCGGCACAGTGGCAGCCATCACAGGGCTGTACCTGTTCTCCCGAAGGATAGCCCTACCACGAAGAACCAGGTTGGCTCTCACTTCCCTGCTGACCATGGCATACATGCAGGTGGGCCTGGGCATCTGTACCCTGCTGATGTATGTGCCCACACCCCTGGCAGCCACTCACCAGTCTGGCTCCCTGGCACTGCTCACCCTAGCCATTTGGCTACTCACTGAGCTCCGCAGAGTCGCTAAGTGAACCGAGGAGGTGCCCACAGCAGAAACTACAGGTTTCTCTCACTAATGCTCTCTGTCCAACACTGATGCCAACAGATAAGTAAGGAACCTCTAGTCTACAGCTTCTTGTCACCATCACCTTGACTAACTAATGCAATCTCCTTCACTCCATTCAATCTTGGTCCTAGAGAGCCCCAGTCTTTTCAAAAAAGGTCAATCTAATAAGCATGAGGAAAAACATTCCCATAGTAACAACCATTTAGATTTTAACCATTTAGCAATCCAGTTACTTGTTCAGTCAAGGGAACTCTGGTCCTTGATGGCTGAAGGATTTTCCTCTTAAATTTCAGATTTTCCCCAAATACTGTCTGCTGTGCGAGTTATAAAATCACTTTGTATTAAGGTCTATTACAGttaaaatgtggtttatttGCAGCCTGGAGAGAGTATTAATTGGATCTAGTAAATCACCTAATTAGACCAATTCATTAACTTAGAGCTAGGTTGAGTCAGAATCCAGAAGACACTGCATTCTTTCAGAAGTTAATTTGAATCATTAGAccgaaaatatatttttcagtttttacatgAGGTGCAAAGCAAAGTGCAATGCCCCTGAAGCAAATGCCTTTTCCTTGCTGAACAGTTCTGAGTAGCTGATTAACCTTAACCCCAAACAGCTGCTCAAAACTATTTTGTTCTGTCAACCAACcaatcatttttgcattattgtGGACTTCATATGACTATATCCAAGTGCACTTAACATGATAATCAGAGTTTCCCTAGCAGTAATACACAAGGCCCTGTAAAATGTCAATGACCTAGTGATCAAAACCTAAAGCAGTGAATTCCAATGAAGTGGAGTATGAAAGCATAATTATTTGGTAAACTGTGCACTACCAGCTTATTAGAAATATCCTATTAGGATAGGATAGTTAAGATATTGCCTCATAATGctgaccaaaaaaaataatggacaaaaaaaGAATCTATtccatggggggaaaaaagtatatgtgtgtgtgtgtgtgtatgtatacactcacctgaaggattattaggaacacctgttcaatttctcattaat

Function

GO: NA

KEGG:

id description
K02259 COX15, ctaA; heme a synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003359 True 2429 mRNA 0.47 9 21151851 21177530

Neighbor

gene id symbol gene type direction distance location
AMCG00003351 morn4,LOC107719210 coding upstream 387166 20760320 ~ 20764685 (+)
AMCG00003348 NA coding upstream 558351 20492359 ~ 20593500 (+)
AMCG00003349 slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140 coding upstream 743167 20403696 ~ 20408684 (+)
AMCG00003343 lbx1a,lbx1,LOC107585373,LOC107716305 coding upstream 1024295 20126144 ~ 20127556 (+)
AMCG00003340 NA coding upstream 1173936 19955769 ~ 19977915 (+)
AMCG00003361 NA coding downstream 348107 21525637 ~ 21748601 (+)
AMCG00003363 NA coding downstream 575816 21753346 ~ 21755934 (+)
AMCG00003370 NA coding downstream 868783 22046313 ~ 22067314 (+)
AMCG00003371 NA coding downstream 957371 22134901 ~ 22144437 (+)
AMCG00003372 NA coding downstream 1146302 22323832 ~ 22487911 (+)
G142482 NA non-coding upstream 8720 21103820 ~ 21143131 (+)
G142419 NA non-coding upstream 380072 20767354 ~ 20771779 (+)
G142412 NA non-coding upstream 402487 20745545 ~ 20749364 (+)
G142397 NA non-coding upstream 507057 20644481 ~ 20644794 (+)
G142376 NA non-coding upstream 552306 20595470 ~ 20599545 (+)
G142556 NA non-coding downstream 396584 21574114 ~ 21659778 (+)
G142572 NA non-coding downstream 588811 21766341 ~ 21766544 (+)
G142580 NA non-coding downstream 623489 21801019 ~ 21806660 (+)
G142620 NA non-coding downstream 813982 21991512 ~ 21994674 (+)
G142664 NA non-coding downstream 914171 22091701 ~ 22094748 (+)
AMCG00003324 NA other upstream 1493374 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 1518701 19618881 ~ 19633150 (+)
G142172 NA other upstream 1614760 19535693 ~ 19537091 (+)
G142078 NA other upstream 2459647 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 3426470 17721244 ~ 17725381 (+)

Expression


Co-expression Network