AMCG00003361


Basic Information

Item Value
gene id AMCG00003361
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21525637 ~ 21748601 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003361
ATGGCCAGACTCGGGCAGACACCAGATTTCACCACCGCGGCCATCAACTTTCCCATCGGAGACGACTGCATCGCTGTTCTTCCGGCTCACAGCTGGGATCCCAAATCTTCTGTTCTTAAGACACTGGCACTTCATTACACCAAGTGCACTGCATTAATTGTTAACATTTTGGGTCCAGAGTTACATAAGGAGCTGCTGACAGATATTGGTGAGAGTTTTTATTCACTTATCATTGATGGGAGCACTGACATAACATTCACACAGACTCTTTCTGTTGTAATAAGATACCCCAGTTCTTCACAAAAGAAGATTGTGTCAACATTCTTTAAGTTAATCCCAGTGATTGAGACAGATGCAGAATCCCTTTTACAAGTCCTGTGTACTGCACTGGAAGAAGATGGCCTGGATCTGCAAAAGTACATTGGTATTGGTGTTGATGGAGCAAGTATAATGACAGGATGCAACCAATTCATTGCACACCTTGCTGAAGGAAAAAGTCCATCATTTAGTTCTGTTGGGAGCAAAGCCTCTGAAGTATTGCTAAGGCAATACTTGGATTTTCTTGTGCGTGAGATCTACAACTGGTTCTCACACAGTGCAAAGCAAAGAAATGTATACAAGGAATTGTATAACACTCTTGAACGTGTTGACCCCATAAAAATGATTCAACCAGCAGCAACCAGGTGGCTCAATAGAGGAGAAAGCATTTCTATAGTACTGGATCGGTGGGATGCTCTCAAGCtacattttgacatttcaaaGGACTCAGAAAAGTGCTATACAGCAAGTCTCCTCAGTGAAATGATGACAGATCCATACAATAAACTGTATCTCATCTTCCTGAAAAATACCCTTGGTGAGCTAAACACAATTAACCAGTTATTTCAGTTGGAGACTGGGAGCCCCTCCAAGCTTTTTCATGATTTAATGCTCTACTACCAATCTGTGTTGAAACTTCTAGTTAATCCAAGTCAGCTAGAGAAAATTTCCAACTCTGAGTTAGTCACTTTTCCTTTTGAGATGTATATCATCCCTACATCAACCATATACCTGGGTTATGATTTCACTTCCTATGCAGACAGTCTTAAAGACAAAGTGGCTGTAGAGTCAGTGAACGAGAAGTGCAAGGGGATGCTGGTCCAGATGGCACATCAACTGAAGGCTTCACTGCCACCCAACATCAACAAACTAGAAAAACTGGACATGCTGCACCCAAAAGAGGAATTATCACAAATCAAGAGACCCATCACAGCTATTGCTGAGGAATTCCAGGTGGTATGCCAAGACATAGGAGGAACTGAACAACAGTGGTCCAATTTAACCAACAAGGCCTGGAACAAAACAGCTGATGAGTCATCCTTCTGGTTTGAGACATGCCCTCACCATGTTAACTCTAACAATTTCAAATGCAGCGGTGGAACGAACTTtcagcactgtcacactgatgaaaacaaaactaagaaaCTGACTTCAGTCCAAAACTTTGGAAAGCCTGCTGCAAGTCAAATACTGCTTGgaCTAGGCAATGAAAATTCACCCCTTATTTATGTTGGAAACTTCAGTGAAGCAGGGGTAGAGACAGATATTGTGAAAGGGCACAGTTTGATCAGTGATCTCTTTGAAGAAGGCAGCTTCCTTGGGTTGCTCAGAGTACCTCTCGTACTGGTCCAGCCCGTCCTGCAgcttcagtgtcagtgtgtcgtAGTTGGAGCGCACCACCTCCAGCACCTGAAAGTGACCCTGGACATCAACACCATACAGCAGCTACTCTGGGAAGCTACTgatattgatgatgatgttgagGGTCTGAAGATGCTCTACATAAACGCACTTCTCATTGAGAGAACAGTAGAGCTCAGAGACAGTCTTACCGCGAAGATCCCATCGTACATCAAGACCACCTTCTCCTTCAGGGGCTTCCGAGAGGCAGAGGACTTCCGCAACAAGCCTGACTTCTTCTCCACCTGGGCCATGGCTGGGTCTGAGGACAAGGGAAAAATCCATCAAGCACTGCTTCCCAGAGGCACCACCAGTAGGGTTCTGTGGAACTATGGCCCAATAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003361 True 2064 mRNA 0.44 11 21525637 21748601

Neighbor

gene id symbol gene type direction distance location
AMCG00003359 NA coding upstream 348107 21151851 ~ 21177530 (+)
AMCG00003351 morn4,LOC107719210 coding upstream 760952 20760320 ~ 20764685 (+)
AMCG00003348 NA coding upstream 932137 20492359 ~ 20593500 (+)
AMCG00003349 slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140 coding upstream 1116953 20403696 ~ 20408684 (+)
AMCG00003343 lbx1a,lbx1,LOC107585373,LOC107716305 coding upstream 1398081 20126144 ~ 20127556 (+)
AMCG00003363 NA coding downstream 4745 21753346 ~ 21755934 (+)
AMCG00003370 NA coding downstream 297712 22046313 ~ 22067314 (+)
AMCG00003371 NA coding downstream 386300 22134901 ~ 22144437 (+)
AMCG00003372 NA coding downstream 575231 22323832 ~ 22487911 (+)
AMCG00003374 NA coding downstream 963291 22711892 ~ 22716708 (+)
G142482 NA non-coding upstream 382506 21103820 ~ 21143131 (+)
G142419 NA non-coding upstream 753858 20767354 ~ 20771779 (+)
G142412 NA non-coding upstream 776273 20745545 ~ 20749364 (+)
G142397 NA non-coding upstream 880843 20644481 ~ 20644794 (+)
G142376 NA non-coding upstream 926092 20595470 ~ 20599545 (+)
G142572 NA non-coding downstream 17740 21766341 ~ 21766544 (+)
G142580 NA non-coding downstream 52418 21801019 ~ 21806660 (+)
G142620 NA non-coding downstream 242911 21991512 ~ 21994674 (+)
G142664 NA non-coding downstream 343100 22091701 ~ 22094748 (+)
G142690 NA non-coding downstream 900339 22648940 ~ 22706530 (+)
AMCG00003324 NA other upstream 1867160 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 1892487 19618881 ~ 19633150 (+)
G142172 NA other upstream 1988546 19535693 ~ 19537091 (+)
G142078 NA other upstream 2833433 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 3800256 17721244 ~ 17725381 (+)

Expression


Co-expression Network