AMCG00003363


Basic Information

Item Value
gene id AMCG00003363
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21753346 ~ 21755934 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003363
ATGAAACGACTCGCCTCGTTAGAGCAGGTAACAGATTTTGGTGATTTTACTAGAGGCAGCGATTTAACCGACTTTTTAAAACAgagttatattaataattgtagtAAGAACGTTTTACATAATGTCCGGGTTAGTCCGGACGGCCAGCACATCCACGCTATCCTCCACAAACCAAATAGCGTTGTGTTGACATTTGACAAACTGCAAAGGACTCCGCTTGTGCCAAGTCACAATAAGCACATAGAGCTGAATTGGACCAGGACGGTGCCCATTGTGGATCTAGTCTATTTAGAGTCCAGACAAAAAGAAGGCGGCTCGGTGGATCTGGTTCTTGTTCTTGAGAATGGGAAAGTCGAGTTCTGGAAATACTGGGAGGGGAAAGGTAGCTGGCAGTTGCAGGTAACGTCGGAGCTGTGTAACAGTCCCAGGGCTAAAGTCGTCTCCGTGTGTACCAGTAGCAAATGCATCATCTGGTGTGAGGAGAGACCCCCTTCGGAAAGCGCCTCCGTCTGCACCGCCGCCCGCAACACCTTCAGGTACTGCATCTGCACCCGGAGTTACGAGCTGGAGGAGCGGGGTGTCTCCTTAGGTGGGGTGAAAATCATTTTGCACAATAATCCCCGATACACGGTGATCTCCTCGGGGGGGAATGTTTACCTGCTGCCGGATAAGGAGACCCAACCCGCCAGCCTCTCAAAATTCTTCCTGATGTGCTCCCCGCCGACGATGGACACTATCACAGTCTGCAATGCTTGTAAGGGGACGTTCCTGAAAAAAGAGTCGCGGCAAGGAAAGGAATCTGACTTCAAAAGACTCATTTCGGACTGTATTGGTGTTCTGTCCACTAGCAGCCCCCCGGAAATCTGTTCCGTCTTCCCTACAGGATGTGGGGGTCTGCTACTGCTTCTGAGCTCGGGCTGGATCAGCATCCTGGGGGCGGACGGTGTTCTGCGCCAGGTCTACAAACTGGCAGACAATTGCTTAACCGACCgcagcacacacagcagcatGCAGGTCTACGGTGAGCTGCTAGCTTTTGCCGTGGAAAGGACTCTTTACTTGATCGACACTAGGTGCGGCGCCGAACTGGAAAAGATCCCGTTGAATAAAGAAGGGCTGCTCTTCGTGAACTGCAGGGCGAGACATCTGCCTCACATGCTCACGGATGCCGGGATCTTTGTAAGCAGGCTCAGGGGACTGGACCGCAGCCCAAAGCCCCTGTGCCACACGGAGAGCATCAGGCCTGACTCCCTCTTGGTGGAGGCAGTGTTCGAAGAAGCCTGTAAATACTACCAGCGCCGCAGTTTGAGCAGCACACAGCTGACTGTGGAGAAACTGAAAAGTGGGGGCATGTTCCAGGCTCCCATCGCTCTGTCCTCCATCCTTGGCGGCTACCTGAGGGGCCACAAGCCGACCGGTGATCTGGTGCAGGGGGAAGACCCCATCAGCTATGCCAAGTTGTTCACCTCTCTGGAGCCGGAGCTCAAAAGCCTGATAGCCCTGGAGGAAGTGAAGACTGCAGTGGTCAGGGCTTCTGAGAAAGAGCTGTCGGGCTACAGCGAGGCCCTGGTGAGTGAGGAGGTTTCCCGTCTGCTGAGCACTGACTTGGACAGGGAGAACCTGCAGTACCTCAACATGGTCTTCAACACCTTTCCACTGGAGTCTTGGCAAGCTCTGCAGGCTGGGCTGCAGCTGGGGCCCAATGGGGAGGGCTCCCTTTTGGCCAAGACTGGCACTGAGGTGTGGAAGTCAATTTTGAGCCCCTTGCCAGCTGCCCACCCCTCCCTCACCAATAGCCAAAAGGGGGGCACCCCTGCCAATAacaaccacagcagcagcaatggGGCGGTGCCAGTTTTTGAACTGATCTGCCGCTCACTCCTCACCTTCCAACCCCAGTGGTTGCCCAGGTTTGTGGAACTGGcccaacagcagcaacaacaagcAGGCGCATCATCGTGGAGTTACGGGGTGAAGGAGGGACCAGAAAGCGTGCCCCTGTACAAGCGGGCCTTGTCTGTGCTGCCTGAGAGAAGTGAGTCCCAGGATCTGGAGGTGGAGCTGCTGCTGTGCAGCCAGAGACCCAACGCTGTCATGCAGGCCTTGCGGACCCTAATAGAGCAACGGCAGTGGGGACGGGTCACACAGGTGGCAGAGAGCTTCTGCCGACAGAGCCCACTACTGAACAAGGAGATCTTCACCTCCCTCCTGTGTGAGGTCTCCCAGCACAGGGATCTGGACCCTTACCTGGATCTGCTGTGGACCCTGTGTCCTGAGGACTTCACAGTGACCAGCATCCTCAATATTGTCCTGAAGAAcctgcctctctcctccccaGAGCCAAGCCCCTTCCAGACTGAAGGCAGCCAGCTGACCATTGGCACTCTGAAGCCACTGCTGAGCAAAGTGTTGCAGAGGGAGACCAAACCTAGCCAGAGGTATGCAGACATCCTCCAGTCACCCTTccctccccccacacccccccggCAGATCAAGGGACTGCCCTCGTCTGTGTCCGAGCCTGCTATTAATCAGTCCAAACAGAGGACACCCTCTCCCACCAAAATCCCAACTACAACCAACTCCTGA

Function

GO: NA

KEGG:

id description
K20192 HPS6; Hermansky-Pudlak syndrome 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003363 True 2589 mRNA 0.55 1 21753346 21755934

Neighbor

gene id symbol gene type direction distance location
AMCG00003361 NA coding upstream 4745 21525637 ~ 21748601 (+)
AMCG00003359 NA coding upstream 575816 21151851 ~ 21177530 (+)
AMCG00003351 morn4,LOC107719210 coding upstream 988661 20760320 ~ 20764685 (+)
AMCG00003348 NA coding upstream 1159846 20492359 ~ 20593500 (+)
AMCG00003349 slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140 coding upstream 1344662 20403696 ~ 20408684 (+)
AMCG00003370 NA coding downstream 290379 22046313 ~ 22067314 (+)
AMCG00003371 NA coding downstream 378967 22134901 ~ 22144437 (+)
AMCG00003372 NA coding downstream 567898 22323832 ~ 22487911 (+)
AMCG00003374 NA coding downstream 955958 22711892 ~ 22716708 (+)
G142556 NA non-coding upstream 93568 21574114 ~ 21659778 (+)
G142482 NA non-coding upstream 610215 21103820 ~ 21143131 (+)
G142419 NA non-coding upstream 981567 20767354 ~ 20771779 (+)
G142412 NA non-coding upstream 1003982 20745545 ~ 20749364 (+)
G142397 NA non-coding upstream 1108552 20644481 ~ 20644794 (+)
G142572 NA non-coding downstream 10407 21766341 ~ 21766544 (+)
G142580 NA non-coding downstream 45085 21801019 ~ 21806660 (+)
G142620 NA non-coding downstream 235578 21991512 ~ 21994674 (+)
G142664 NA non-coding downstream 335767 22091701 ~ 22094748 (+)
G142690 NA non-coding downstream 893006 22648940 ~ 22706530 (+)
AMCG00003324 NA other upstream 2094869 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 2120196 19618881 ~ 19633150 (+)
G142172 NA other upstream 2216255 19535693 ~ 19537091 (+)
G142078 NA other upstream 3061142 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 4027965 17721244 ~ 17725381 (+)

Expression


Co-expression Network