AMCG00003368 (pdlim1)


Basic Information

Item Value
gene id AMCG00003368
gene name pdlim1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21766960 ~ 21775448 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003368
AGAAATGTAATGGTCCATTTCTTCCCCCATCAGGTCAGAATCCAAAATGTGGTCCCCACTTGTATCTGAGGAAGGAAAGACCAACCCATATAAGATGAACCTAGCTTCTGAACCACAGGAGGTGAAACCCATAGGGAGTGCGCACAACCGGAGTGCTTTGCCGTTTGCAACTTCCAGCACTAGCCCAAAAGTCGTCACCAATCAGTACAACAACCCGGCAGGCCTGTACTCCTCGGAGAATATTAAGAACTTCAACAGCACTCTGGAAGCCAAGACCAGCCCTGCTGCACCGGAGCAAAGCAAGAAcCCATTAACTCCCTCTGGAGGGTTCCAAGCTCCCTTTGCTTCAGTGTATAACCCTCACAAGCCTGGCAGCACCCCAGCCCCTGTATTGCGGCGCCACAGCACATCGTGTGTCCCCAGCCAAGTGCGTGTGGGCCCCCAGGAGCTGAAGACCGCTGCCCAGTGCTGCCCAAACAGCCCAGTGGAGGTGGATGTGCCGGGGCTCAAAGTTCTGCATGTGCAGTTTAACTCCCCTTTACAGCTCTATTCACAAGCTAACATACTGGACTCATTACAGGGGCAGATCTCTACAATCAGCCCTGAGCTTGTCAGCCCGGACACATTTCAGCCACCTACTGTCAAGCCGGTGATAAATACAGACTCTGAGGTGTACAAAATGCTGCAGGAAAATCAAGAGACAGACGAACCCCCACGACAGTCTGCTTCCTTCAAAGTGCTACAGGAGATCCTGGAATCTGATGAAATTGGAGAAAAGCCATCAGGATTCAGAAGTGTGAAACCTCCCACAACGAAAATTGGGTCTTCTATTGGGAGTGCCGAGAAGCTGCCAACCTGTGACAAATGTGGATCGGGAATTGTGGGTATGTTTGTAAAGCTGAGAGACAAGTTCCGACACCCTGAATGTTATACATGTACTGACTGTGGAGTAAACCTGAAGCAGAAGGGTCACTTTTTTGTGGAGGAAAAGATCTACTGTGAAAAACATGCCAGGGAACGGGTCACTCCCCCTGAGGGCTATGACATTGTAACAGTTTTTCCCAAATAGACTGGAGAGGCAAATGCATCTGAACTACATTTGTGTGCCACGCTATGAGAAACGAGCATTTACTCTTCTCGGTTGCAAAACTAAAGCCAAAATAGAGTAtcatttgcttaattgaaaatGGTAATTCAAATGGTATGATCTGCCAAATGCTTATCACATTTGTAATCTTCAATAtggctttaaaaaagaaaatggggatttattgattttgtatctattttcaaaacaacggtgcatataatttgtttgtatttgaataaactACCTTTTCATGTAAGATTTGTTCAGCATCTTTCTTTCGACTgaatgcaatgcatttttttcagaGACCATGTTCTTTGCTGATTTGGAAATACGTGCTGCAAAGAATTGGTTGaagccatttttatttaatgatatattttattagaatgaatacaaatattttgacttctatgcaaatatatacatttgacaCATGTATCACACTTCAG

Function

symbol description
pdlim1 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be located in cytoskeleton. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including anterior axial hypoblast; digestive system; epidermis; nervous system; and yolk syncytial layer. Orthologous to human PDLIM1 (PDZ and LIM domain 1).

NR:

description
PREDICTED: PDZ and LIM domain protein 1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003368 True 1542 mRNA 0.44 6 21766960 21775448

Neighbor

gene id symbol gene type direction distance location
AMCG00003362 cunh10orf76,lg09h10orf76,LOC107714152,LOC107551381,LOC107588454 coding downstream 13912 21743289 ~ 21753048 (-)
AMCG00003364 NA coding downstream 41069 21525072 ~ 21725891 (-)
AMCG00003360 NA coding downstream 515065 21198592 ~ 21251895 (-)
AMCG00003357 cutc coding downstream 620646 21143389 ~ 21146314 (-)
AMCG00003358 NA coding downstream 631580 21134071 ~ 21135380 (-)
AMCG00003369 NA coding upstream 25582 21801030 ~ 21814784 (-)
AMCG00003366 NA coding upstream 42738 21818186 ~ 21866585 (-)
AMCG00003365 NA coding upstream 193257 21968705 ~ 21990420 (-)
AMCG00003367 LOC107084148,LOC107376893,LOC102788851 coding upstream 218796 21994244 ~ 22020014 (-)
AMCG00003373 NA coding upstream 328679 22104127 ~ 22108082 (-)
G142570 NA non-coding downstream 4702 21762012 ~ 21762258 (-)
G142549 NA non-coding downstream 307727 21451675 ~ 21459233 (-)
G142533 NA non-coding downstream 518526 21247543 ~ 21248434 (-)
G142531 NA non-coding downstream 553569 21176344 ~ 21213391 (-)
G142440 NA non-coding downstream 951762 20814899 ~ 20815198 (-)
G142661 NA non-coding upstream 291505 22066953 ~ 22069982 (-)
G142663 NA non-coding upstream 309470 22084918 ~ 22085191 (-)
G142665 NA non-coding upstream 316253 22091701 ~ 22094628 (-)
G142709 NA non-coding upstream 927134 22702582 ~ 22706511 (-)
G142725 NA non-coding upstream 1052624 22828072 ~ 22828460 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 1890198 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 2197345 19543637 ~ 19569615 (-)
G141826 NA other downstream 5018529 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 6626141 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 7092540 14669415 ~ 14674420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_11897443_11903607 PDLIM1 coding CI01000012 null 11897443 ~ 11903607 (+)