AMCG00003369


Basic Information

Item Value
gene id AMCG00003369
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21801030 ~ 21814784 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003369
ATGACACCTGCCCGTGCAAGATTTGACTTTAAAGCGCAAACACTGAAGGAGCTGCCATTCCAAAAAGGGGACATCGTGTATATCTATCGTCAGATTGATCAGAACTGGTTTGAAGGAGAGCATCATGGGAGAGTTGGGATTTTTCCTCGTACATATGTGGAGCTGCTGCCCCCAACAGAGAAAGCTCAGCCCAAGAAGTCGGCCCCAGTTCAGGTGCTGGAGTATGGAGATGCCCAGGCCAGGTTTAACTTCACTGGGGACACGGCTGTTGAAATGTCCTTCAAGAAGGGAGAGAGGATCACACTGATACGCAGGGTGGATGAGAACTGGTATGAGGGCAAAATCTCAGGCACGAGTCGCCAGGGCATCTTCCCAGTCACTTACATTGAGGTGCTGAAGAGGCCTCGGGTCAAAAATGGCGTGGATTACCCTGATCCCCCAGTGAGCCAGTCTCCCAGTCGCAGCAGTACCGCCTCACCGCAGTGTGGTCAAAACAGAATGCTCACTCCCACCCCTTCCCCGCCCCCCATGACATGCCGTGCCATTTCCCCTGAGGTGCAGGCCATCACCTCAGAGTGGATCTCCCTTACTGTGGGCCTGCCCCGCAGTGGCACCCCTGCCGCCACACCTCCTCTCCCACCGCTCCCTGAGGGCTTCTACTTCTGTGGGGACTATCTCTCACCCTCTGCAGCCACCAGCCCAATCCCTCCAGTTAGTAGCCCCCTCTACAGTCCCTTGGGCACCTCTCCCGCCACCTCTCCACTGCCTCCACCTTACCCACCGCGCCCTGACTCCTCCTGCTGTGCCCCTGCCCCCTACCTTACCTTCACTCCCCCACAGGGAGAGGAGCGCCTGCTCTGCTCCCCTTCCGGCACTCGCTCCCCCAGCCTCTCCACCTCCAGAGGCCAGAGCCCTGAAGCTGGGTTTGGGGGAGACAGCCCCCAGCAGAGGCATCTGGCCAGGGGGCTAGAGGAGAGCCAGCTGTGCCAGGAGCTGCTCAGTATTGTGCAGGGAGGAGAGAGTacagagggaggcagggagagcaGGCAGGATTCCTTGAAAGACTGGCAGAGTAGCCCAGGAAAGAAAGCAGACAGGTATATCCATAGTTCCCCTAGCCAAGCTTCCATCTCCAATGCCCCTCTCTCACAGCCTTCGACCACACCAGTCATGCCCCCACCTAGGCTCAGACCTCCAGGGTCACAGCTCCTGAAGAACGAGACTGGATACCATGGGAAGACATCAAGAAGTCCAGTTTTCCTGCGTGATATCCCAACAAATGTCATGAATGCCAACTCTTTTGCGGATGCAGTCTGCAATGAGATCATGAATATTGCAGAAAAGTCCGTCCATTACTGCAGCACCCTTTCACACCCGCTTGACTCTACCCATAGACTGCCTTCTAATCACAGTAAACAATCTTTCATCATTTCTCAGCAACCCCAGGCTCAGCAGCGTGGGAGCAGCCCTGATCAGAGCCAGACCAGCTGTGAAGTCTTCCAAGCCCTGTACAGTTACGTGCCACAGAATGAGGATGAACTGGAACTCCGGGAAGGAGATGTGGTCAATGTGATGGAGAAGTGTGATGATGGCTGGTTTGTTGGTACTTCCAGAAGAACAAGACAGTTTGGCACCTTCCCTGGAAACTATGTGAAGCCTCTTCACTTGTAAACACTGCTCTTCTAAATGGACACTAATATAATAAGCAGCATCCCCCAGCAGCCTGTTAACTACCATTactttttgaaagaaaaaagaaaaagaaaaaaaaatgttatatgaaTACACCTTTCTTAACTGTTGAGCTGGCGAGCGAAGTAAAAATGTGTGAGGTATGTGAATATATGGTAAGAGGTTCATGTGAGAAGTGCGATCATTTTCTCTGTTTCAGATGATGTGCCAGACTGCAATCACAAAAAACAGGCAGCTGAGGATTTATGGCCTAAACTTTTCTGTCTGTTACACAATATCACTTTGCTTGCTACACTGGCTTGACTTTGTGCAAACTAAATGAGACTGCCTTTTGCAcctttcaacaacaacaaaacgagTTTTTGTCAGACCTTGTGATACTGTAGGACTGTGTGCAGGTCACAAGACTGCCAGTTGAGTCTGAAGTGAAGATAGTTtgacaaaatgtatatgaatatatgaaaagATATTTCTTAGAAGTAACCATAGGGGAAAAAAGTGTCTAAGTAGACTTATACTCCAAATCTTCATATTTTTCCCTTACAAGGAGGAAAGCATTTTATATAAccaaaattaattgtattgtgcaGATATATGGCTGcacattaaaacagattaaGATGCCACCTTCAGTGGTTTAATTGCAGCCATGAAACACATCAGAAGACTGAAAACTTATTTGTTGAAATTCATTTTCACCAGATGCATGTTCTGCTCATATCACTGAAAGCTGACATCAAGGATTTTGGTTAACTTCTTAAGGGCTCATAACCTCTTCTTGGAGACATTGCAGTAGTCAGCAGATGACATCATACCCGTAGGATGAAAAGAGGAGCATTAAAGATGGAATTTTGTGTGTTGGTCATTCAGGTTTAATCTGgagatattgtttgtttgtttgtttggactAGCCATCCACTTCTATTGTAAGATCTCCAAACAGAGCAACGGTGGAAAATCTTTCCTGATTAAAGCTGAAGATGAAGGGTCtattgaaaggaaaaagaagaatGTACAAACAGGAAAGGATACTTTCATTACAACACCAGCTTTTAACAAATACTGCCAGTGAAAACACCTGCATTCCCCCACCCCTAATCCTTTGCCTGAAACCCTTGATTCTTCCTTATAGTATTTTTAGATTGAATATGTCTTCTGTAATGCTAAGACCATTCTTTAATGGTTTAGACTGCTGTTCTTGTCACATAAGTAACATATTTAAgagttgaaaagaaaaacaaagtgacattaaaaatataaataaacacctaTTTTTATGCTGATAACTTTTTTAGAGagaatttatttaacaaaaaaaaactattaaaatgcagGAGCTGCCATGACAAACTTCATCAGTGTGAGATGGAAAAGCACAGTTCCCAGAGGTTGTTTGTGGATAGAGGGAAACCTTCAGAGGAGTTGGATTCCtgttaaaatctaaataaagtttaaaacaaagatcATTggattaacaaaacaaataataatgaaatctaAATCTGATACTTCAAAAGTCGCAAGATGACATATGAAAGGTGTCAGACACTAGAGCTGGTTGATGAAATCTTGAGTACAAATGCAAAAGTATCCCATAATGCCTGATGGGAAACATGTCaacatcaatgtatttattttgcaacaaaTAATACAGCCCTTCTCCAATCTTTTAAATTGGCCAGACAGTAACTGATTATTTCCCCCTCTTGGTTAAAACTACCAGActgtcagtttttgtttttgagtgtcAGCCTCAGATTTCAAGGTTCAGACCTCTAGTTCATTCAGATATTTAACTTGGGGTTTGAAACACTCAGATTTCGTTTTGCAAATTTTGAAGTTTCAGATTTCAGgatattgaaaacataaaaagaaaaaacacatttcaagttGTGGACTTTCTACAAGAATGGAACTATAAAACTGCAAAAGTatgattgtaaatatgtatatttgattttgtacagAATGTGTACTTATCctgtatagaaaataatttaatagagAGGAATTTAAGTGACAGAAAAAGAGAAGGCAGTTATGGAGCTCTTTGAATTTACCCATTTATTCACCTGGAGGATTGCAAAGcacacaacataaaaaacaagtattagcacagaaaaacacatgcactaaaaaaaatgttaaatatcatGATACCATGTTCCCCGTAGTCCTCATATTATGTATGGTTTATTGATTTtgcatcatttttctttttgcctgTTTTTATCTAATTTAAGAATACCCCAAAAAGTATATTACTCACACCTAGCAGCGTAACACAAGTTTTAATATATCTAATGGAAATGTTTACAGTATGCTGACTGTATATAACATAATGcttctaatacatttttatttaccaTTTTCTGTATGCTGCACCCCATTATAAACACATCATGcagcattttgtgttgttttcttctaatTGCAGTGCTTTATGAtttcacaaaatgaattaaaaaagagCATCTATTTACTGCTGTGCTGAATTCAGTattatgcaatatttaataaactttaTTCAACCCTG

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0052652 cyclic purine nucleotide metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0046068 cGMP metabolic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009187 cyclic nucleotide metabolic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003369 True 4228 mRNA 0.42 10 21801030 21814784

Neighbor

gene id symbol gene type direction distance location
AMCG00003368 pdlim1 coding downstream 25582 21766960 ~ 21775448 (-)
AMCG00003362 cunh10orf76,lg09h10orf76,LOC107714152,LOC107551381,LOC107588454 coding downstream 47982 21743289 ~ 21753048 (-)
AMCG00003364 NA coding downstream 75139 21525072 ~ 21725891 (-)
AMCG00003360 NA coding downstream 549135 21198592 ~ 21251895 (-)
AMCG00003357 cutc coding downstream 654716 21143389 ~ 21146314 (-)
AMCG00003366 NA coding upstream 3402 21818186 ~ 21866585 (-)
AMCG00003365 NA coding upstream 153921 21968705 ~ 21990420 (-)
AMCG00003367 LOC107084148,LOC107376893,LOC102788851 coding upstream 179460 21994244 ~ 22020014 (-)
AMCG00003373 NA coding upstream 289343 22104127 ~ 22108082 (-)
AMCG00003375 NA coding upstream 1017405 22832189 ~ 22833510 (-)
G142570 NA non-coding downstream 38772 21762012 ~ 21762258 (-)
G142549 NA non-coding downstream 341797 21451675 ~ 21459233 (-)
G142533 NA non-coding downstream 552596 21247543 ~ 21248434 (-)
G142531 NA non-coding downstream 587639 21176344 ~ 21213391 (-)
G142440 NA non-coding downstream 985832 20814899 ~ 20815198 (-)
G142661 NA non-coding upstream 252169 22066953 ~ 22069982 (-)
G142663 NA non-coding upstream 270134 22084918 ~ 22085191 (-)
G142665 NA non-coding upstream 276917 22091701 ~ 22094628 (-)
G142709 NA non-coding upstream 887798 22702582 ~ 22706511 (-)
G142725 NA non-coding upstream 1013288 22828072 ~ 22828460 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 1924268 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 2231415 19543637 ~ 19569615 (-)
G141826 NA other downstream 5052599 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 6660211 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 7126610 14669415 ~ 14674420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location