AMCG00003371


Basic Information

Item Value
gene id AMCG00003371
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22134901 ~ 22144437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003371
ataaaaTGACAGCtctacaaaacattaatttgaaaatggatcCTAAAGATCTTCAGATCAGGACTATAACAGTGGAAAAGTTGCTTGAGCCACTGATCATACAGGTAACAACTCTGGTGAATTGCCCTAAAAATCcatccaacaaaaaaaaaggccgCTCCAAAAGAGCCAAGGTACTCTTGAAGTCAGTGGAAGAAGCTACTCTGAATTTAATCAATAAGGGTGAAAAGATTGTGAAGGAAACTGCCATACTAAAGGAAGAGCTAACTGCA

Function

GO:

id name namespace
GO:0005902 microvillus cellular_component
GO:0005938 cell cortex cellular_component
GO:0030057 desmosome cellular_component
GO:0016342 catenin complex cellular_component
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003371 True 272 mRNA 0.38 2 22134901 22144437

Neighbor

gene id symbol gene type direction distance location
AMCG00003370 NA coding upstream 67587 22046313 ~ 22067314 (+)
AMCG00003363 NA coding upstream 378967 21753346 ~ 21755934 (+)
AMCG00003361 NA coding upstream 386300 21525637 ~ 21748601 (+)
AMCG00003359 NA coding upstream 957371 21151851 ~ 21177530 (+)
AMCG00003351 morn4,LOC107719210 coding upstream 1370216 20760320 ~ 20764685 (+)
AMCG00003372 NA coding downstream 179395 22323832 ~ 22487911 (+)
AMCG00003374 NA coding downstream 567455 22711892 ~ 22716708 (+)
G142664 NA non-coding upstream 40153 22091701 ~ 22094748 (+)
G142620 NA non-coding upstream 140227 21991512 ~ 21994674 (+)
G142580 NA non-coding upstream 328241 21801019 ~ 21806660 (+)
G142572 NA non-coding upstream 368357 21766341 ~ 21766544 (+)
G142556 NA non-coding upstream 475123 21574114 ~ 21659778 (+)
G142690 NA non-coding downstream 504503 22648940 ~ 22706530 (+)
G142722 NA non-coding downstream 656415 22800852 ~ 22801060 (+)
G142724 NA non-coding downstream 683664 22828101 ~ 22828463 (+)
G142727 NA non-coding downstream 749411 22893848 ~ 22894101 (+)
G142729 NA non-coding downstream 749758 22894195 ~ 22894481 (+)
AMCG00003324 NA other upstream 2476424 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 2501751 19618881 ~ 19633150 (+)
G142172 NA other upstream 2597810 19535693 ~ 19537091 (+)
G142078 NA other upstream 3442697 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 4409520 17721244 ~ 17725381 (+)

Expression


Co-expression Network