G138303


Basic Information

Item Value
gene id G138303
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 302082 ~ 387075 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU173957
NNNNATTTCAAAGGCGGGCCACTGAAACATACAGGTTAGATGAACTCGGACGATACACAACACAGGCTGCTGGGTGAACCACGCAGCTTTACTCCCGCACCTCTCTGGGAAGGCAGGGGGTGCGTGTCGACCACGGTCCTGTGTGTGGTTACGGGTCCGGCTCCGGGTCGGGTGGAATTAAGAGGCTCGGGGtcagaaacaaaaggaaaaagctCCCAGGATCTTTGGCTTCTTCTtcacaaaaagaaacaatcaaggtGCATGCTGGGGGATAGACCCCTCTGTGGCGTCTTATTACTTTACCCGCTCCCTCTCCAAACCCTTGACTCATCAATAACAAAGACGGCAACTTCTTGTGCCTTTAAACTCACCTTGTGTGATTATATATAGCGCCTACAGGAAGTCTACAccccatttaaaaatgtccaccttttgttgccttatagcctggaattaaaattgttcTCATCTATTTAATGTATCCACACAGTCAACGCACTTccaagtgaaaatatatatattctagaaatctgtggaaaatgtatatataaaaatgaatcagTGAAATCGCTTGCTTGGATAAGTGTCCGCCCCCTTGTCACAGCAGTCCCCAATGAGCCCCAGTGTGAGCGATCGCCTTCACAGTCACACCCCGAGGGCAGTGGCCTCCCTTGTAgggattcacatgatttcaagaTAAATTCCTGTAGTTCTTCTGCTGGGTGGAGCGTTTCAGAGACGCCTCACCcttgagcaccaaggagctttcagagAACTCCAGGACAGAGATGTCGAAAGGCACAGATTAGGGGACGGgtataaaaacatatcaaaggccttgaatatcctaTGGAGCCAGCGTCAAGTGTTTGGCATCACCAAGACCcagcctagatcaggccatcccttCAAACTGGATGAGCGGGCGAGAAGGAGAAGGGTCAGAGAGGCTACTGAGTGgccaagagctacaggcttctatggccaagactggtccaAGTGTGGATGTGACAACAATGCCCCAGCACTGGACagatctggcctgtatggtagagtggcaaGAAGGCAGCCGTTATTCAAGACAGCCCACCTCGACTCCCAGCTCTGCAGAACAGACATTCGGGAGATTCTGAGGCCGTGTGGCGAGAGCTTTGCGGTTTGACAGAACTTTCTGGCCTTTGTTTGggacaaacccaacacagcgccTCACACACAGAGCGCCATCAGTGCTGGGATGCCTGGAGGGCACCGTGTGACGGGCTGTTTCTCATGGGCAGGACTGGGGCTCTCGACAGGACAGAAAGGAGAATGAAACTGAAGTGGAAGCAGTTCTAGGGGGTGTAGATTTCTGTaggagtgtatatacacacatatatggataaaacaaactgattaaCTTGAGTTGAATGAGCAcgaaaaaaaacaggaatattaagaaaataaaaatctaaaagcTCTTGCTCTAGCCAGTCTGAGTGTCCGGTGCCAGGAGAGCAGGTTCTCCTGGACTGCGTCCTGCGCCCTCCCCCCACCGGCGTCCCTGCTGGCGCACACGTGCTGCTCAGTCTGGGCTGTCGGCACCACAACGCTGTTTTCACATTCTCTGTTTTTTCGGGACCACACTGGATCAAAAGAGCCTGGCAGGCgttcaagaaaacaacaacagcagcagaaaaGGGCCGGGGCAGATTCCCGGCTGTACATCTGGAGCTCCGCGAGGGACCCGCCGCCACAGCGCCGGGGACGCTGCCTGGTGAGGAGAGCCGCGGCCTCCGCTCGGCCGTGATGGCGCTCGATCTCGCCCCACACCCGATTCCCACAGCGCAGAGGGAGGCAGCCTGTGGCCAGTCGCTCGGGACGGCTCCCCTcagagactgacacacacacacacacacacacacacacacacacagcgatgTTTATTCCCCTCTTCTATAATGCAACATTAACTATCCCCTTTCCTTTTaagacaaaatggaaaatctAAGATGTAAAAGCAACACGAAACCCCAGATATGTCCTTAACtactgagaaacaaaaacaatcgaaaacaaacaaaaggaagagAACTCGTGGTCCGAGGACAGAGTGTTGCATTTCTCCGGGGTGAGGAGAGTCCGCCCCCCCGGTCAGTTCAACACGGGCTCGGACAGCAGTTACACTTCAGAacaatatgttcaaatgccGCGGCTCCGGGGCAAACACACCGGGAACCTCGTCTCACTGTGGGTTTGAGGAAGAGCCGGGAGATTTCAGTGCAAAACCCACCACCCCTCCCCagataacataaaataaaataaaagcaagaaaCGTCAGTGTGGGTCTATATATAATTCGGGTTTGGGGATGATGTGATAAAGGAAGGTGCttagagagagatagagacacagagagcgaaagagagacagacagagagagagaga
>TU173958
NNNNATTTCAAAGGCGGGCCACTGAAACATACAGGTTAGATGAACTCGGACGATACACAACACAGGCTGCTGGGTGAACCACGCAGCTTTACTCCCGCACCTCTCTGGGAAGGCAGGGGGTGCGTGTCGACCACGGTCCTGTGTGTGGTTACGGGTCCGGCTCCGGGTCGGGTGGAATTAAGAGGCTCGGGGtcagaaacaaaaggaaaaagctCCCAGGATCTTTGGCTTCTTCTtcacaaaaagaaacaatcaaggtGCATGCTGGGGGATAGACCCCTCTGTGGCGTCTTATTACTTTACCCGCTCCCTCTCCAAACCCTTGACTCATCAATAACAAAGACGGCAACTTCTTGTGCCTTTAAACTCACCTTGTGTGATTATATATAGCGCCTACAGGAAGTCTACAccccatttaaaaatgtccaccttttgttgccttatagcctggaattaaaattgttcTCATCTATTTAATGTATCCACACAGTCAACGCACTTccaagtgaaaatatatatattctagaaatctgtggaaaatgtatatataaaaatgaatcagTGAAATCGCTTGCTTGGATAAGTGTCCGCCCCCTTGTCACAGCAGTCCCCAATGAGCCCCAGTGTGAGCGATCGCCTTCACAGTCACACCCCGAGGGCAGTGGCCTCCCTTGTAgggattcacatgatttcaagaTAAATTCCTGTAGTTCTTCTGCTGGGTGGAGCGTTTCAGAGACGCCTCACCcttgagcaccaaggagctttcagagAACTCCAGGACAGAGATGTCGAAAGGCACAGATTAGGGGACGGgtataaaaacatatcaaaggccttgaatatcctaTGGAGCCAGCGTCAAGTGTTTGGCATCACCAAGACCcagcctagatcaggccatcccttCAAACTGGATGAGCGGGCGAGAAGGAGAAGGGTCAGAGAGGCTACTGAGTGgccaagagctacaggcttctatggccaagactggtccaAGTGTGGATGTGACAACAATGCCCCAGCACTGGACagatctggcctgtatggtagagtggcaaGAAGGCAGCCGTTATTCAAGACAGCCCACCTCGACTCCCAGCTCTGCAGAACAGACATTCGGGAGATTCTGAGGCCGTGTGGCGAGAGCTTTGCGGTTTGACAGAACTTTCTGGCCTTTGTTTGggacaaacccaacacagcgccTCACACACAGAGCGCCATCAGTGCTGGGATGCCTGGAGGGCACCGTGTGACGGGCTGTTTCTCATGGGCAGGACTGGGGCTCTCGACAGGACAGAAAGGAGAATGAAACTGAAGTGGAAGCAGTTCTAGGGGGTGTAGATTTCTGTaggagtgtatatacacacatatatggataaaacaaactgattaaCTTGAGTTGAATGAGCAcgaaaaaaaacaggaatattaagaaaataaaaatctaaaagcTCTTGCTCTAGCCAGTCTGAGTGTCCGGTGCCAGGAGAGCAGGTTCTCCTGGACTGCGTCCTGCGCCCTCCCCCCACCGGCGTCCCTGCTGGCGCACACGTGCTGCTCAGTCTGGGCTGTCGGCACCACAACGCTGTTTTCACATTCTCTGTTTTTTCGGGACCACACTGGATCAAAAGAGCCTGGCAGGCgttcaagaaaacaacaacagcagcagaaaaGGGCCGGGGCAGATTCCCGGCTGTACATCTGGAGCTCCGCGAGGGACCCGCCGCCACAGCGCCGGGGACGCTGCCTGGTGAGGAGAGCCGCGGCCTCCGCTCGGCCGTGATGGCGCTCGATCTCGCCCCACACCCGATTCCCACAGCGCAGAGGGAGGCAGCCTGTGGCCAGTCGCTCGGGACGGCTCCCCTcagagactgacacacacacacacacacacacacacacacacacagcgatgTTTATTCCCCTCTTCTATAATGCAACATTAACTATCCCCTTTCCTTTTaagacaaaatggaaaatctAAGATGTAAAAGCAACACGAAACCCCAGATATGTCCTTAACtactgagaaacaaaaacaatcgaaaacaaacaaaaggaagagAACTCGTGGTCCGAGGACAGAGTGTTGCATTTCTCCGGGGTGAGGAGAGTCCGCCCCCCCGGTCAGTTCAACACGGGCTCGGACAGCAGTTACACTTCAGAacaatatgttcaaatgccGCGGCTCCGGGGCAAACACACCGGGAACCTCGTCTCACTGTGGGTTTGAGGAAGAGCCGGGAGATTTCAGTGCAAAACCCACCACCCCTCCCCagataacataaaataaaataaaagcaagaaaCGTCAGTGTGGGTCTATATATAATTCGGGTTTGGGGATGATGTGATAAAGGAAGGTGCttagagagagatagagacacagagagcgaaagagagacagaNNNNNNNNNNNNNNacagagagagagagagagagagagagagagagaagggtgaGAGAGTCAGTGCACATGATATGCAGTACGGTTAAAGTGCCGTCCTGCCGAAGGGTCAGGAGAGAGGACAGGGACGGCGCTGGAGCCGGTCCCTCTAGGCTCGGAACAGCAGCATCCTCTCGGCGCAGGCCTGGCCCACCAGCTCGCCGTACTCCTGCACGTCCTTCTCGTCGCAGGGCCCCTTGCGCTTCCTGGCGTAGGCCGCGAAGGGCATGACCGTCCGGCAGTACAGCACCCGCAGCCGGCCCAGCTCCCTCAGGGTGCCCACATCCCCTGC
>TU173959
gagagagaaagagaTTTCAAAGGCGGGCCACTGAAACATACAGGTTAGATGAACTCGGACGATACACAACACAGGCTGCTGGGTGAACCACGCAGCTTTACTCCCGCACCTCTCTGGGAAGGCAGGGGGTGCGTGTCGACCACGGTCCTGTGTGTGGTTACGGGTCCGGCTCCGGGTCGGGTGGAATTAAGAGGCTCGGGGtcagaaacaaaaggaaaaagctCCCAGGATCTTTGGCTTCTTCTtcacaaaaagaaacaatcaaggtGCATGCTGGGGGATAGACCCCTCTGTGGCGTCTTATTACTTTACCCGCTCCCTCTCCAAACCCTTGACTCATCAATAACAAAGACGGCAACTTCTTGTGCCTTTAAACTCACCTTGTGTGATTATATATAGCGCCTACAGGAAGTCTACAccccatttaaaaatgtccaccttttgttgccttatagcctggaattaaaattgttcTCATCTATTTAATGTATCCACACAGTCAACGCACTTccaagtgaaaatatatatattctagaaatctgtggaaaatgtatatataaaaatgaatcagTGAAATCGCTTGCTTGGATAAGTGTCCGCCCCCTTGTCACAGCAGTCCCCAATGAGCCCCAGTGTGAGCGATCGCCTTCACAGTCACACCCCGAGGGCAGTGGCCTCCCTTGTAgggattcacatgatttcaagaTAAATTCCTGTAGTTCTTCTGCTGGGTGGAGCGTTTCAGAGACGCCTCACCcttgagcaccaaggagctttcagagAACTCCAGGACAGAGATGTCGAAAGGCACAGATTAGGGGACGGgtataaaaacatatcaaaggccttgaatatcctaTGGAGCCAGCGTCAAGTGTTTGGCATCACCAAGACCcagcctagatcaggccatcccttCAAACTGGATGAGCGGGCGAGAAGGAGAAGGGTCAGAGAGGCTACTGAGTGgccaagagctacaggcttctatggccaagactggtccaAGTGTGGATGTGACAACAATGCCCCAGCACTGGACagatctggcctgtatggtagagtggcaaGAAGGCAGCCGTTATTCAAGACAGCCCACCTCGACTCCCAGCTCTGCAGAACAGACATTCGGGAGATTCTGAGGCCGTGTGGCGAGAGCTTTGCGGTTTGACAGAACTTTCTGGCCTTTGTTTGggacaaacccaacacagcgccTCACACACAGAGCGCCATCAGTGCTGGGATGCCTGGAGGGCACCGTGTGACGGGCTGTTTCTCATGGGCAGGACTGGGGCTCTCGACAGGACAGAAAGGAGAATGAAACTGAAGTGGAAGCAGTTCTAGGGGGTGTAGATTTCTGTaggagtgtatatacacacatatatggataaaacaaactgattaaCTTGAGTTGAATGAGCAcgaaaaaaaacaggaatattaagaaaataaaaatctaaaagcTCTTGCTCTAGCCAGTCTGAGTGTCCGGTGCCAGGAGAGCAGGTTCTCCTGGACTGCGTCCTGCGCCCTCCCCCCACCGGCGTCCCTGCTGGCGCACACGTGCTGCTCAGTCTGGGCTGTCGGCACCACAACGCTGTTTTCACATTCTCTGTTTTTTCGGGACCACACTGGATCAAAAGAGCCTGGCAGGCgttcaagaaaacaacaacagcagcagaaaaGGGCCGGGGCAGATTCCCGGCTGTACATCTGGAGCTCCGCGAGGGACCCGCCGCCACAGCGCCGGGGACGCTGCCTGGTGAGGAGAGCCGCGGCCTCCGCTCGGCCGTGATGGCGCTCGATCTCGCCCCACACCCGATTCCCACAGCGCAGAGGGAGGCAGCCTGTGGCCAGTCGCTCGGGACGGCTCCCCTcagagactgacacacacacacacacacacacacacacacacacagcgatgTTTATTCCCCTCTTCTATAATGCAACATTAACTATCCCCTTTCCTTTTaagacaaaatggaaaatctAAGATGTAAAAGCAACACGAAACCCCAGATATGTCCTTAACtactgagaaacaaaaacaatcgaaaacaaacaaaaggaagagAACTCGTGGTCCGAGGACAGAGTGTTGCATTTCTCCGGGGTGAGGAGAGTCCGCCCCCCCGGTCAGTTCAACACGGGCTCGGACAGCAGTTACACTTCAGAacaatatgttcaaatgccGCGGCTCCGGGGCAAACACACCGGGAACCTCGTCTCACTGTGGGTTTGAGGAAGAGCCGGGAGATTTCAGTGCAAAACCCACCACCCCTCCCCagataacataaaataaaataaaagcaagaaaCGTCAGTGTGGGTCTATATATAATTCGGGTTTGGGGATGATGTGATAAAGGAAGGTGCttagagagagatagagacacagagagcgaaagagagacagaNNNNNNNNNNNNNNacagagagagagagagagagagagagagagagaagggtgaGAGAGTCAGTGCACATGATATGCAGTACGGTTAAAGTGCCGTCCTGCCGAAGGGTCAGGAGAGAGGACAGGGACGGCGCTGGAGCCGGTCCCTCTAGGCTCGGAACAGCAGCATCCTCTCGGCGCAGGCCTGGCCCACCAGCTCGCCGTACTCCTGCACGTCCTTCTCGTCGCAGGGCCCCTTGCGCTTCCTGGCGTAGGCCGCGAAGGGCATGACCGTCCGGCAGTACAGCACCCGCAGCCGGCCCAGCTCCCTCAGGGTGCCCACATCCCCTGC
>TU173960
GAGAGCACACAGagagagagagagagagagagagagagaagggtgaGAGAGTCAGTGCACATGATATGCAGTACGGTTAAAGTGCCGTCCTGCCGAAGGGTCAGGAGAGAGGACAGGGACGGCGCTGGAGCCGGTCCCTCTAGGCTCGGAACAGCAGCATCCTCTCGGCGCAGGCCTGGCCCACCAGCTCGCCGTACTCCTGCACGTCCTTCTCGTCGCAGGGCCCCTTGCGCTTCCTGGCGTAGGCCGCGAAGGGCATGACCGTCCGGCAGTACAGCACCCGCAGCCGGCCCAGCTCCCTCAGGGTGCCCACATCCCCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173957 False 2424 lncRNA 0.51 2 303398 305860
TU173958 False 2740 lncRNA 0.52 3 302082 305860
TU173959 True 2749 lncRNA 0.52 4 302082 387075
TU173960 False 322 lncRNA 0.65 2 302082 385604

Neighbor

gene id symbol gene type direction distance location
AMCG00002731 NA coding downstream 9607 280814 ~ 292475 (-)
AMCG00002727 NA coding downstream 40909 254949 ~ 261173 (-)
AMCG00002728 NA coding downstream 73913 190340 ~ 228169 (-)
AMCG00002724 NA coding downstream 119559 172793 ~ 182523 (-)
AMCG00002734 NA coding upstream 96827 483902 ~ 484300 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding upstream 98761 485836 ~ 513387 (-)
AMCG00002733 NA coding upstream 177585 564660 ~ 579964 (-)
AMCG00002737 NA coding upstream 363560 750635 ~ 751030 (-)
AMCG00002738 csgr03h10orf54 coding upstream 376054 763129 ~ 768823 (-)
G138282 NA non-coding downstream 71302 227020 ~ 230780 (-)
G138324 NA non-coding upstream 96149 483224 ~ 483603 (-)
G138352 NA non-coding upstream 360419 747494 ~ 748469 (-)
G138371 NA non-coding upstream 414139 801214 ~ 801767 (-)
G138373 NA non-coding upstream 416498 803573 ~ 805155 (-)
G138430 NA non-coding upstream 507937 895012 ~ 898417 (-)
AMCG00002725 NA other downstream 112745 184121 ~ 189337 (-)
G138245 NA other downstream 155242 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 418685 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 533713 920788 ~ 925398 (-)
G138741 NA other upstream 2331133 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3541686 3928761 ~ 3953324 (-)
G138932 NA other upstream 3614575 4001650 ~ 4002804 (-)

Expression


Co-expression Network