G138310 (LOC106579428)


Basic Information

Item Value
gene id G138310
gene name LOC106579428
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 366207 ~ 371624 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU173969
CTGTCCCTGGAGAACTCCCAGCGTGGGTCTTCGGGCAGCTCATACTCGGGCACGCCGGGCAGCATGGGCGAGTCCACGGCAGAGGGGTGGCGCGTGGTGATGCGCACCAGAGGGGTGTTGGAGTTGGTGGAGGAACTCGAGTCCGCGGACACCGTTACCTGTCTGCGCAGGGGCATCTGCTTGCTTAGCTTGTGCACGGCCGGCTGGCTGGCGAAGTCGGGCTTCTTGGAGCTGGTCCTCATGCGGcagaccaccaccaccaccaccatgcaGGCGATCAGGAACACGCCAATGCAGTAGATGGCGATTTCCACGTAGTCTGGCGACGTCAGGCCGGTCCTGATCTGACCCGGGTCGGCTGCACAGGGGAGACGCAGGCACAGTCGTCAGCGCAGAGTGGCACCGGCCCGATGcagacacatggacacagagagacacacaggccTACAAAGACACACACCGACAAGCACACACAAAGGGAGATGCAcatagacatgcacacacagacacacacagtcacatacacatacacatgcaaacAAAGACTCATGGAaagacgcacacgcacacgcacacacacacacacacgccctgCCTGCGTTGCCTCACTCTGGGGTCGGCTACTATTTTGTCAAGTGCAGTTTGTTACCATTGGCTTTCATTCTCCTCCAGTTTCATAAAAACGGGATTTATTGGAATTAGGATAACTGAAAAGGGAACGGGGTTGTAATTAGAAGCAGGAATtgttaaaactaaaattaaataagtaaataaaaagaatgagAAAGCACTAAACCCCCCTCTCCTTTTCCTCGTCCAGAGctcatttattgttatttatatcaGTGTTATTGATATTCAGTGCAGCTCTGTCTTTAAGTCCGTACAGCTTGACAGTGCTGGTTTGTCAGAACATAGTTTACATCTGAAAGAGACTCTCACTGGCTTTCCTggagaaaacatattttgtcccaaaaaagaaaagaaaggaggaGTAAACACAAATTGTATGAGAGCACAAATAAGGGAAAGGAGACCTTGGACCGAGCGCAGGAATAATCTTGCTTAAGAGGAAGTGCATTCTTATTCAGGAGCTGTAGGACCAAATAGCAGAACAAATCCTGAATAATTTATTAACTTCCACAAAGGCCTCCCTTGTGCgatttcagaaaagaaaacaaaaaacaaacagaatcatTCCCCTCCAGATCTCGTCCTCCACCGCGGCGCTGGGCGGCTCCGAGGGGCCTCTCCTGAGTCTGCCTTCCTGCCAGATTGTGTGCAGTACAAACAGTGCAAACGATTAGTCTTCGTGTGTGAATCTGCACATGCAGGGATGCGGGGACTGTGTCTTTAATACGAGAGAAGAACAAGCTCTTTCTTCTCCGCGAGGGGGACGTCTCTCCGTCACAGACGCTGCGTGTACCAGGTGTGGAGAGACGACTTCCACAGGCACCGTCCCTATGTCCCGAGAGAGACGTCCGTCTGACAGCGTAGAGGACCCGTCCCGTGGGGGGTCTGTGCCACACTGCCAGCGACGAGACCAGTGGGTTGCGAAAGACNNGCGCACATCTGTGCACTTTTAAAAGCTCTGAAACCaccggtgtgtgtgtggttcgGATTAAAGCACCGGCAGGGGAGCGAGAGATTGAAC

Function

NR:

description
PREDICTED: fibroblast growth factor receptor 2-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173969 True 1654 lncRNA 0.52 3 366207 371624

Neighbor

gene id symbol gene type direction distance location
AMCG00002731 NA coding downstream 73732 280814 ~ 292475 (-)
AMCG00002727 NA coding downstream 105034 254949 ~ 261173 (-)
AMCG00002728 NA coding downstream 138038 190340 ~ 228169 (-)
AMCG00002724 NA coding downstream 183684 172793 ~ 182523 (-)
AMCG00002734 NA coding upstream 112278 483902 ~ 484300 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding upstream 114212 485836 ~ 513387 (-)
AMCG00002733 NA coding upstream 193036 564660 ~ 579964 (-)
AMCG00002737 NA coding upstream 379011 750635 ~ 751030 (-)
AMCG00002738 csgr03h10orf54 coding upstream 391505 763129 ~ 768823 (-)
G138304 NA non-coding downstream 23689 335737 ~ 342518 (-)
G138282 NA non-coding downstream 135427 227020 ~ 230780 (-)
G138324 NA non-coding upstream 111600 483224 ~ 483603 (-)
G138352 NA non-coding upstream 375870 747494 ~ 748469 (-)
G138371 NA non-coding upstream 429590 801214 ~ 801767 (-)
G138373 NA non-coding upstream 431949 803573 ~ 805155 (-)
G138430 NA non-coding upstream 523388 895012 ~ 898417 (-)
AMCG00002725 NA other downstream 176870 184121 ~ 189337 (-)
G138245 NA other downstream 219367 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 434136 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 549164 920788 ~ 925398 (-)
G138741 NA other upstream 2346584 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3557137 3928761 ~ 3953324 (-)
G138932 NA other upstream 3630026 4001650 ~ 4002804 (-)

Expression


Co-expression Network