G138333


Basic Information

Item Value
gene id G138333
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 506798 ~ 507401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU173992
CTGTGGTGCTGGCTGGGCCGGGCCGGGTGGGCCTTGAGCTCCCACAGCATCACCCTGCCGTCGCTGATGAAGAGCGCCGCCGCGTTCTCGCTGCTGGGGCACAGCGCCATGCTGAACGGACGCACTGTCTTCGTCACGCGGATGGCGTCGCACTGGGAGCGCAGGTCATACACTAGCTCCTGCACACTCTGCTCTGGGTCTGCCGGGaccgtgggggggggggggNNNNNNNNNNAGAGAACACGCTCAAACACGTGAGAACATGCAAGGGCTTTCTCTTCTGTACGCACTTATTGCCTTCTAGGGCTAAATGACATGAACTAAAGGGCTAAACAGACACCATGTATCAGCCGTGTAAAGGTGAAAGCACGCTCTCGCTGAAGGCCTCGCCTGTTCTTTCTGCACATGTCGCAGGCATGTGTTAGGAAACAGATGAACATTAATACCGTGTCCAGAAGCGCAAAGAGCACAGCGTGTGACGGAGCTCTGGCCGTGACTTGCCTGCGTCCTCCTGCGCCGCACAGCTGGAGCGGCAGATGCGCAGACTGATGCAGCCGTTCTCGTGCAGGCAGAACAGCGCGTCCCTCTGGGTGCACGGCGCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173992 True 604 lncRNA 0.59 1 506798 507401

Neighbor

gene id symbol gene type direction distance location
AMCG00002730 fgfr2 coding upstream 124368 350764 ~ 382430 (+)
AMCG00002729 NA coding upstream 204534 301750 ~ 302264 (+)
AMCG00002726 ate1 coding upstream 230007 263321 ~ 276791 (+)
AMCG00002723 NA coding upstream 322117 165868 ~ 184681 (+)
AMCG00002720 NA coding upstream 360098 137527 ~ 146700 (+)
AMCG00002739 NA coding downstream 192919 700320 ~ 707201 (+)
AMCG00002736 cdh23 coding downstream 210729 718130 ~ 728487 (+)
AMCG00002735 NA coding downstream 228933 736334 ~ 760207 (+)
AMCG00002741 cdh23,LOC106579432,LOC107679169,LOC107549130 coding downstream 269189 776590 ~ 800016 (+)
AMCG00002740 LOC107702684,LOC107660219 coding downstream 322028 829429 ~ 836163 (+)
G138332 NA non-coding upstream 88 506358 ~ 506710 (+)
G138329 NA non-coding upstream 12000 494459 ~ 494798 (+)
G138328 NA non-coding upstream 12494 494066 ~ 494304 (+)
G138327 NA non-coding upstream 14434 491241 ~ 492364 (+)
G138325 NA non-coding upstream 18131 483833 ~ 488667 (+)
G138334 NA non-coding downstream 2468 509869 ~ 510688 (+)
G138343 NA non-coding downstream 98314 605715 ~ 605927 (+)
G138344 NA non-coding downstream 141192 648593 ~ 649012 (+)
G138356 NA non-coding downstream 253313 760714 ~ 762195 (+)
G138375 NA non-coding downstream 300655 808056 ~ 808613 (+)
G138387 NA other downstream 387427 894828 ~ 898423 (+)
G138394 NA other downstream 403709 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 417830 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 581877 1089278 ~ 1093079 (+)
G138476 NA other downstream 588538 1095939 ~ 1097475 (+)

Expression


Co-expression Network