G138334


Basic Information

Item Value
gene id G138334
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 509869 ~ 510688 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU173993
GGGCCAGGTTGGACATGTTGAAGGGGTCGAAGGAGAAGGACAGGATGTTCTCGGCGTAGCTCTTCTTCCACAGCTTGGTGCCGGTGTCAGCGTTCCACAGCACAATGTAGTTGGGCGGGTGCACAGCCAGCAGCAGGTCCCGGGAGGCGTCCTGGTTCCACAGCCACTCCATATCTGTTGGAGAGCACACAACGATCACCTGCAAACCCTCAGCCCAGCACACGCGGCCTGGGGGAACCTGAGGGCAGATTCCAGTgcctctctcccccaccccccactcctcATTTAAACCCCAGAACATGGACCTTTAATTCCATCTCCATGGCAAATGGGCCGTACAGTCACTCGGTCACATATTTGAACATATATATAGTTCATCCATCTGTTACTCAAACCTCATTTTCAagcaagaaagagaaagaaagacaaatacgGACAAAAAGGACTGATGGAAACCTGACACGTTTAAAAAACCAAGGGAGTCCCTGAGCAGCAGACCAGACAGACCCCATTCCTGACAGTTAATGAAACTCGTTACGGCAGCAGAGCGCCACGCAGAGTGGGTGTCAATCAGCTAATTACTCCCACAGCGGCAGGAGCCACACTGGGGTGATTCgcagggaagagagagggggccCTTTACGTAGAATCAGCCCTGCATGCCTGATCTCTGAGATTCACCGCTTCCACGAGAACCGAGGGTAGGATGATCAATCCGGCGAGATGAAACAcagaaaggagaaagagaggaagaggaacagCTCTACCCTGGCAGCTCAAGAGCAGCACATGTGTCAGAGTCATCTGGGGCCGGGTCCcg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173993 True 820 lncRNA 0.54 1 509869 510688

Neighbor

gene id symbol gene type direction distance location
AMCG00002730 fgfr2 coding upstream 127439 350764 ~ 382430 (+)
AMCG00002729 NA coding upstream 207605 301750 ~ 302264 (+)
AMCG00002726 ate1 coding upstream 233078 263321 ~ 276791 (+)
AMCG00002723 NA coding upstream 325188 165868 ~ 184681 (+)
AMCG00002720 NA coding upstream 363169 137527 ~ 146700 (+)
AMCG00002739 NA coding downstream 189632 700320 ~ 707201 (+)
AMCG00002736 cdh23 coding downstream 207442 718130 ~ 728487 (+)
AMCG00002735 NA coding downstream 225646 736334 ~ 760207 (+)
AMCG00002741 cdh23,LOC106579432,LOC107679169,LOC107549130 coding downstream 265902 776590 ~ 800016 (+)
AMCG00002740 LOC107702684,LOC107660219 coding downstream 318741 829429 ~ 836163 (+)
G138333 NA non-coding upstream 2468 506798 ~ 507401 (+)
G138332 NA non-coding upstream 3159 506358 ~ 506710 (+)
G138329 NA non-coding upstream 15071 494459 ~ 494798 (+)
G138328 NA non-coding upstream 15565 494066 ~ 494304 (+)
G138327 NA non-coding upstream 17505 491241 ~ 492364 (+)
G138343 NA non-coding downstream 95027 605715 ~ 605927 (+)
G138344 NA non-coding downstream 137905 648593 ~ 649012 (+)
G138356 NA non-coding downstream 250026 760714 ~ 762195 (+)
G138375 NA non-coding downstream 297368 808056 ~ 808613 (+)
G138376 NA non-coding downstream 298208 808896 ~ 810889 (+)
G138387 NA other downstream 384140 894828 ~ 898423 (+)
G138394 NA other downstream 400422 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 414543 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 578590 1089278 ~ 1093079 (+)
G138476 NA other downstream 585251 1095939 ~ 1097475 (+)

Expression


Co-expression Network