G138343


Basic Information

Item Value
gene id G138343
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 605715 ~ 605927 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174003
CAGCAATGTCACATGGCCggcagggttggggtcaattccactaattcaattccaattccattcTTTATCCTTTTAAATtccatcaaatcaattaattatccaaaacactttcctaaattccttttcaattcaattcatctcaattccaaattcagatcaattctgcaaactcaattccaattcgatatttctcccacaccaattccttaatcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174003 True 213 lncRNA 0.35 1 605715 605927

Neighbor

gene id symbol gene type direction distance location
AMCG00002730 fgfr2 coding upstream 223285 350764 ~ 382430 (+)
AMCG00002729 NA coding upstream 303451 301750 ~ 302264 (+)
AMCG00002726 ate1 coding upstream 328924 263321 ~ 276791 (+)
AMCG00002723 NA coding upstream 421034 165868 ~ 184681 (+)
AMCG00002720 NA coding upstream 459015 137527 ~ 146700 (+)
AMCG00002739 NA coding downstream 94393 700320 ~ 707201 (+)
AMCG00002736 cdh23 coding downstream 112203 718130 ~ 728487 (+)
AMCG00002735 NA coding downstream 130407 736334 ~ 760207 (+)
AMCG00002741 cdh23,LOC106579432,LOC107679169,LOC107549130 coding downstream 170663 776590 ~ 800016 (+)
AMCG00002740 LOC107702684,LOC107660219 coding downstream 223502 829429 ~ 836163 (+)
G138334 NA non-coding upstream 95027 509869 ~ 510688 (+)
G138333 NA non-coding upstream 98314 506798 ~ 507401 (+)
G138332 NA non-coding upstream 99005 506358 ~ 506710 (+)
G138329 NA non-coding upstream 110917 494459 ~ 494798 (+)
G138328 NA non-coding upstream 111411 494066 ~ 494304 (+)
G138344 NA non-coding downstream 42666 648593 ~ 649012 (+)
G138356 NA non-coding downstream 154787 760714 ~ 762195 (+)
G138375 NA non-coding downstream 202129 808056 ~ 808613 (+)
G138376 NA non-coding downstream 202969 808896 ~ 810889 (+)
G138378 NA non-coding downstream 207366 813293 ~ 821565 (+)
G138387 NA other downstream 288901 894828 ~ 898423 (+)
G138394 NA other downstream 305183 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 319304 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 483351 1089278 ~ 1093079 (+)
G138476 NA other downstream 490012 1095939 ~ 1097475 (+)

Expression


Co-expression Network