G138375


Basic Information

Item Value
gene id G138375
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 808056 ~ 808613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174040
GTCACACTgcggggggagggagggagcgttAGACCGGAGACGGACAGAGAGCCCTCACACCGAGCCGGGCGCCCCCCCACTCACCTGCTCGCGCACGCCCTCGGGCAGGAAGCTGCACACCTTCCGCACCGCGTCCTCGATCTCCGCCTCCGTGGCGTTCTGCTCCAGCATGCCGTCGATGTACTGCACCGCCAGCTTGCACACCTCACAGAACCCGCCGGCCTGGAATTGGGCCCGGTCCATCTCGGCTGCGGAGGAGTAGAGGGAGCAGTGAGTTGGGGGGACGGAGCGCCGGCGCACGGATTCGGACGAGACGACGCCGCCGGTTAAAGGCCGGGACCGGGGTACTCACGGATGTAGAGGCGGCTGGCGTCCTTGCACAGCCCCAGCAGGGTGCACACGGTCTTGGGGTCGGCCTCCTGCACCAGCAGCTCGATCACCGCCTGGCCGTACACGTCGATCAGGGAGGCCGGCAGCACCGAGCACACCTTCTCCACCGCCTGCACCACCTCCTTCTGCGGAACCAAGGGAGCGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174040 True 537 lncRNA 0.69 2 808056 808613

Neighbor

gene id symbol gene type direction distance location
AMCG00002741 cdh23,LOC106579432,LOC107679169,LOC107549130 coding upstream 8040 776590 ~ 800016 (+)
AMCG00002735 NA coding upstream 47849 736334 ~ 760207 (+)
AMCG00002736 cdh23 coding upstream 79569 718130 ~ 728487 (+)
AMCG00002739 NA coding upstream 100855 700320 ~ 707201 (+)
AMCG00002730 fgfr2 coding upstream 425626 350764 ~ 382430 (+)
AMCG00002740 LOC107702684,LOC107660219 coding downstream 20816 829429 ~ 836163 (+)
AMCG00002747 mcu coding downstream 82062 890675 ~ 893192 (+)
AMCG00002746 NA coding downstream 91210 899823 ~ 904354 (+)
AMCG00002753 NA coding downstream 182971 991584 ~ 1008956 (+)
AMCG00002760 NA coding downstream 295135 1103748 ~ 1107546 (+)
G138356 NA non-coding upstream 45861 760714 ~ 762195 (+)
G138344 NA non-coding upstream 159044 648593 ~ 649012 (+)
G138343 NA non-coding upstream 202129 605715 ~ 605927 (+)
G138334 NA non-coding upstream 297368 509869 ~ 510688 (+)
G138333 NA non-coding upstream 300655 506798 ~ 507401 (+)
G138376 NA non-coding downstream 283 808896 ~ 810889 (+)
G138378 NA non-coding downstream 4680 813293 ~ 821565 (+)
G138379 NA non-coding downstream 10713 819326 ~ 841728 (+)
G138385 NA non-coding downstream 34915 843528 ~ 849673 (+)
G138393 NA non-coding downstream 100774 909387 ~ 911080 (+)
G138387 NA other downstream 86215 894828 ~ 898423 (+)
G138394 NA other downstream 102497 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 116618 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 280665 1089278 ~ 1093079 (+)
G138476 NA other downstream 287326 1095939 ~ 1097475 (+)

Expression


Co-expression Network