G138379


Basic Information

Item Value
gene id G138379
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 819326 ~ 841728 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174047
TAGGGTGATAAATACTAAAATCCCATCGCTCGATTCAATGAGTCGTTCAAGAACTGTgaagttgttttttccccattttgtcCAGCTGTGGCTTTTGTTCTCcagtttcttgttttgcattttaaatcgttttttgttttttttcaaatgatttattttaatagtgcattttaaattacaggagatacatatatatatatatatatgtatgtacgaAACAACAATCAGGCATTTGGTGTTGATGTTGGCGGTGCGGAGCCGAGAGGGGGTCCAGAGCACAATCAGAGCGGGACTGCAGTGAGCAGATCCCCCCGTGTGAGGGGACGGGACGGACAGCGACAGGGTTCTGCACAGAGACCTGGGGGTCCCGTCCCGCCTGATCGGGCCTCTGGCGGTCTGATCGGTTGAGCGATTGGGAGGCTCTTGACCAATCCCCACTCCCGCCCTACTGCTTGTGGATGTTGCTGGTGAAGTCCCAGGCCGTGTCCTGGGCGCACTTCCACATGGCGCGCACCAGCCGTGTGAAGCCCATGTCCTTGGGCTTCTCCAGGCCGCGCATCAGCCGCTGCTTCATGATGGAGATGAACTCCTTGTTGCTCAGCTCCCCGTTCC
>TU174048
tatatatatatatatatatatatatatatatatatatatatatgtatgtacgaAACAACAATCAGGCATTTGGTGTTGATGTTGGCGGTGCGGAGCCGAGAGGGGGTCCAGAGCACAATCAGAGCGGGACTGCAGTGAGCAGATCCCCCCGTGTGAGGGGACGGGACGGACAGCGACAGGGTTCTGCACAGAGACCTGGGGGTCCCGTCCCGCCTGATCGGGCCTCTGGCGGTCTGATCGGTTGAGCGATTGGGAGGCTCTTGACCAATCCCCACTCCCGCCCTACTGCTTGTGGATGTTGCTGGTGAAGTCCCAGGCCGTGTCCTGGGCGCACTTCCACATGGCGCGCACCAGCCGTGTGAAGCCCATGTCCTTGGGCTTCTCCAGGCCGCGCATCAGCCGCTGCTTCATGATGGAGATGAACTCCTTGTTGCTCAGCTCCCCGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174047 True 612 lncRNA 0.51 2 837209 841728
TU174048 False 449 lncRNA 0.56 2 819326 841728

Neighbor

gene id symbol gene type direction distance location
AMCG00002741 cdh23,LOC106579432,LOC107679169,LOC107549130 coding upstream 19310 776590 ~ 800016 (+)
AMCG00002735 NA coding upstream 59119 736334 ~ 760207 (+)
AMCG00002736 cdh23 coding upstream 90839 718130 ~ 728487 (+)
AMCG00002739 NA coding upstream 112125 700320 ~ 707201 (+)
AMCG00002730 fgfr2 coding upstream 436896 350764 ~ 382430 (+)
AMCG00002747 mcu coding downstream 48947 890675 ~ 893192 (+)
AMCG00002746 NA coding downstream 58095 899823 ~ 904354 (+)
AMCG00002753 NA coding downstream 149856 991584 ~ 1008956 (+)
AMCG00002760 NA coding downstream 262020 1103748 ~ 1107546 (+)
AMCG00002761 NA coding downstream 363090 1204818 ~ 1216164 (+)
G138376 NA non-coding upstream 8437 808896 ~ 810889 (+)
G138375 NA non-coding upstream 10713 808056 ~ 808613 (+)
G138356 NA non-coding upstream 57131 760714 ~ 762195 (+)
G138344 NA non-coding upstream 170314 648593 ~ 649012 (+)
G138343 NA non-coding upstream 213399 605715 ~ 605927 (+)
G138385 NA non-coding downstream 1800 843528 ~ 849673 (+)
G138393 NA non-coding downstream 67659 909387 ~ 911080 (+)
G138399 NA non-coding downstream 96419 938147 ~ 938495 (+)
G138475 NA non-coding downstream 246711 1088439 ~ 1088816 (+)
G138502 NA non-coding downstream 533979 1375707 ~ 1395263 (+)
G138387 NA other downstream 53100 894828 ~ 898423 (+)
G138394 NA other downstream 69382 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 83503 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 247550 1089278 ~ 1093079 (+)
G138476 NA other downstream 254211 1095939 ~ 1097475 (+)

Expression


Co-expression Network