G138385


Basic Information

Item Value
gene id G138385
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 843528 ~ 849673 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174055
TGGACAGCACAGTGGTCAGGAAGATGTAGTCGGAGAAGGAGATCAGGCCGCACTCCCCCAGCTTGTAGAAGATGCTGTCCTCGTCCGCGAACCTCTCCCGCTCCTGGGACAGCTTCTGTGGGGGCAGCGAGACAGCGGGGGACACAGTGAGGCCCGCGCCAGCAGACCCCAAATCCAGAGCAGACCTACACATCTATCTGAGACTGTCCTCTCCTCTGGGTCCCCTCACCCTTTCGTCCTCCCTCTCTTTGGTTAGGCCTGCTGTACTCACTCCTAATGCaaaacccaaacccaaaccAAACCGCCCCCTACAGAACCACAGGACTGACACATAGTGATGGGCAGTTCCATTATTTAGACTCGATTCTTTTGATTCGGTTAAGTTTGGATAATTGATTCAATTCGTTAATTTGATTCACTGATTCAATGACAAGAATCGGGATCAGTTAGATCGATGTGAACCAGAACGAACAAATCATTTGGGAACTGCACATCGCTACGGAGGCGCGAGTCCAGACACCAACGCGCCGGGGAGGGGGCGAGACACTGCGTTCGACTGCCACGCTGCGTTGCCTCCTCCCACTGGACCGTCCTGCACCGTCCAGAGACACCCCGGGTCCAGGGAGGACAACAGACATACCCCCTTTCACCCTCCACCCCCTATAAAACATACCTGACAGCCTCTAGGGAGTAAGGGGAAAAGCGACTGACAGTCTCAGTGAAGTTTGCCAATTGAtcgattgtatttatttcacaaacgTCACTTACAAAGAGGCGCGGGGATTAAAACACACCAAGTCTCTACAGAAacacaaggagagagagagacaaacaagaACATACTaacaggagacagacagacagagagagagagagaggagagacccAGCCATCATCATGCAAGAACAACACGTCAACCCAACAGAGCAGGCCAAACACCGCTGCCACCACAGGAGGACACTGGAGAGGACAAGACGCGTTAAAGACACACAGACCGAGTCGCACAcccacagtcacacacagcatGCCGGAGACCAGCCTGGGCCCCCGTGGTGCTTTACCTCTGTCTGCAGGGCGATCCGAcacagaggagggagaggagagagaagggctttaatcacagagcacagcaaggacagcagcagcagcagcaatctGTTGCATTAGCACACGCACACGCCCCAGTGCAATCACTCACTCCATCACGGGCTATTGCACCACACATCAGAGCTTCACACTATGACTGTCTCTCACACAAGGGTTGTTTGTGCTTCCATACATCCAACATGGCTGACTAATAAACAATCTCCATTGCTAGGATTGTGATTATGATTGTGCAAATGAGACCCTCAGATGGACGCACAGTGGCGCCCGTGTCCGTCCACGTCCGTCCACGCCAGCGCACGGCACCCACGCGGCTCCAGGGACTCGGCTCTCCGTCAGTTGTGGTGGATAAAAGCTCCTGCTAAACGACTCTTAATTATTTATCGGAGGGGGAAACAATACACCGGGTTGCGGAGCCGCAGACCCGAGAACCCGAGGGGGCCTGGACCCGCTGAGCAGCCGCTTCCTGTCTGCAGATCTCTCCACAATACCCCCCCCCACAGAGATCAGGACCTGTACGGATGTCCCACCCCATCTGCATGCTTTTGCACAAaacccccccgccccgccccaccacacacacacacacactctcatcgAAACCAGACACtccctcactctcacacacaataagcaatacattattttccttgaGTTTAAACTGCAAAGAGCATCGCAGTGACCAATCTGTAAACCAGGCGTGCAATAAAGCACTCGACCGAGCCGCTCCAGGAGCAGCTCCGGTGTGCCTCTGATTCTGGGAAAGGCCACGGcgagattaaataaataactaaagcCTCTTCAGTCAAGACACAAGTCCTCTCCAGTTAACACTGCAAGGCTGGGGTCTCCAGAGGggctacagacacacacacggagGCCCAGAGTGACAGCAGGGGGTCGGAGATCAGTGTGTGCAGCAGATCGCAAGGAAAACACATGAAGACTCTTGAAATGCAATGTCAGCCTAAACCCCTCCCATCCCCCCAGgactacactacactgacagacacacacacagacgcacacacacacattgtttttgtaaCCCACAGCCATTTGGCATAGCACAGACCAGTCAATACACCAAATCAGATCAGTCTATGAATAAACAAGCGCTGTCCCATCACCCGAGAGCTGTCCTCACACCTGTTCCTGGAGGGCCCCACAGAGAGCCACACCGAGCCTAAGGCCCTCAGTCAACACTGTGACCAGGTGTGAGCACCACCACTGTGCAGACGCACAACCCCCGTCTGACCGGCCtggttttcacttttcactgcCTCACTCTGAGTGGGGGGGTCCTACAGACTCTCAATCAGGGCCAAGAGCctacagctgaaataaaaacaaatccagacgGATCCGACGGCTGCGTGAATGGATTCAGGCTgctgtgtgcatgagtgtgcgtctctgtgtgtgcgtgcacgtgtgtgtctgtgtgagtgagtgtctgtctgtctgtcagtgagtgtgtgtgtgtgtgtgcgtgtgtgtgtccgtgtgtagGCGAGCGTGTGTCTGTGCTTGCGTGTCCGTGTATGCGTGTGTCCATGAGTGggtatgtatgcgtgtgtgagcgtgtgtctgtctgtctgcgtgtgtgtgtgtgtatgtatgtgtgtagtgtgtatgtaCGTTGCTTCTCCGGACGTCCTGGCGGGAGGAAGACAGCGTCAGGGTTAGACACACGGCACGCAGGCTGGTTTCCTTGACAACAAGACCTTCAGCATTCCGCCCAGTGATgagcgggggggcggggggcagcTGGCGTGGTACGGGGCAGGAGGGCAACAACACTGGGGTGACAACTCCAGCTGAAACTACACTTCATTGGGAAGTAAGAAAAGTAAAGTAATTGATCGTTCCAGGGGGCGGGTTTTCCTCGGGGGGGGTGATGGAGTGCCCCCCCCCACGCTGAGCCGGCCCCCGCACCGCTCATCACCCGCGCCGACTCCACGGCAGCCACTCCCGGGGACTCAGGCAGCGGGAGCAAAGCAtgctgggagggagggagctgcGGCGCAGAAAGCATGATGGAGGGGGAGCAGAGGGATGGGGGAGGGCAGGAGAGGTTGGGTTCTAATAAGACGGGCCTTTCAGAACCACAGAGCAGCGCAGACAGGACACCGgggcccacacacacacaccgaagCCTTCAGGTTCTCCTTCTGCAACCTTTGTACAGCTCTGCAGTATAACCCTTTACAACCCCCCAGGCCTGCCCGGTCTTGCAGGGAACTCCCAGGGCGGGGCAGCGAGACACACATACCTACACAGCCACGGACACCTGGGAGgagtgcacgcacacacacgcacgcacacacacacacacacacacacacacacactgccctgcaCTGTTGACACTGAAAGGGCCTCCTATCGGGCAAGGTGGGAAAAGTGGCTGGGGTGGGAGGAGGAAGGAACAGAGGGGTCCAGAACAAACACGGTTGGAAACAGTTGGACACGCTACACGCTCGCGgtctcacacacgcacatgcgCAGTCTTGCACGCTTCGTACCTGCCAAAAATCCTGTTAGGGAGGGTGAGGGCAGGACAGGACAGGGGGAGAGAAGTGAAGAGAATGGGGTTTCATTGGTTATGTGGAGACAAGAGAGCAGCACATAGAGATCATTGGACATTGCAAACtgcacaggagagagagagagagagcgagagtggtgagaaagagagagagagcacaagtGGTGAGAGAGAGCACATGAGAACAGGACCGAGCCGTACTGGTGGTGCCAGCACACAGCAGccaaagagacacagagaggacggGCAGTAACTCTTCAATGGTGCACTGAAACAAGGCTCAGAGCACACGCTgccagcgcacacacacaagcacacagttAGGGTTTGCCATTTGCCGAATCTCGCAGAGCAGCAACAGCAAGAGACACTGGCGCGAAGGATAGACGCCTCCGTCGGCAGCGATGGACGGAGGTGGCTCGGCACACGCCAGCCCGTCTGTGCGGTTCTCGCTGCCGTGGGTTTGTCGCTCTATCTACTCTGTCAGTCACACCCTGGAGTCATGCCTCATGCACAATTAACAAGCTCAGGCAACCAAACGAGCCCCACACATTCAGCGGgcaaataccaaaaacaaaccaatgcatCACAACGGCCACCAAACAGTCGCTGGGGGGGGTCTGAATAATGGCAGGCGCTTCTCCACGAGCTGGAGAGACCGTCCGCAGACTCGAGCACATCAGCTTTGTGCCCCTGTGTCTGGGACTCTACAGTGCATCACAGGTCTGACAGCTGACCGAGCACTGCGGGAGCCTCCCGACACGTTTCAGTGCAGTGCTTCCTGTGGAGGAATGTGCTCGATCAGTGTAGCTTCTGTGGAGAGTGACACACTGCACGGTGTCAGAGAACTGGCACGGTGTAGCTTCTGTGGAGAGCAACACACTGCACGGTGTCAGAGAACTGGCACGGTGTAGCTTCTGTGGAGAGCAACACATTGCACGGTGTCGCTTCTGTGGAGTgtgacacactgcactgtgtcagAGAACTGGCACGGTGTAGCTTCTGTGGAGAGcgacacactgcactgtgtcagAGAACTGGTACCAGGACAGTACAGAcaggaaacagacacagagggagCAATCCACTCAGATCCACACGTGGGATGTTCCGTCTAACCGCAGCAGAAACatgtaataatgaaaaataatgttaaatttgtatataatgaacacacacatacacacagacgcGCACAATCTTACCCCAGTAAAGTGCGCATACTGAGTAAGATCCACACTCCCGCAGAGTGGGTAAGCACACTGAAGAGCCCAGCCGAGACGCTGCACCTGTATATCTCCACAacaccccgccccccccacgGCCACAGCCAATGGCCAGACGACACAACCCAGAGCCCCTCCCTCACAGCTTACCTTGCCATCGTATCTCTTCACCAGGAACTGGTCCAGACCcagatctgagagagagagagagggagagagttgtGACCAGAGGCctgtgcacagagagagggtTTAGGAAAAAGATCTGTTCCCCCTCTCAGAAACAGCCTTACCACAGAGCTCTGAGGGGCACTGATCAGCCAATTCTGCAATATATAGCGCATTTCACACCACAGTACCTCAAAgtgctttatattaaaaaaacaacagtgccTGTCTAAAGGGTGATGTTGGAAATAACTCATTTCAATGGCTCAACCTGGGGGGGGGGTCACACGTTTACTGAGCACCTGTTGTCAGAACCGCCGAGCTGAGGTCAGCCATCAGACACCACACCGTATAATCTCAAaccacaaagagagagagagagagagagagagagggagagggagagggagagggagagagcagcagTCTGATGGCTCACTCTTTTAATAACATGCTGAACGGAGGGCAGGCCAGGCAGCTGCCCCTCTGCTCTCACGCACTTCCTCCAAAGGTTGCACAGGGTTTAAAAATACTGCCGCTGGGGCAGCTGTCGGAGGCTCAGTCACGCACCCAGGGCCTGGAACGCTACCCCCTTCCCCGACGGCCGGTTCAAACCAGCTTCCATCCCCGCAGGTCACAGACCCTCAGCTGCGACGCCACAGGTGGTCTCTGACCCGAGCTTCTTCCCCCCGGCCTCACTCCCACAGACGGGGGCTCTCTGATCTCCAGGGTAATATCGCCCGTTTTGAGGGAGGCAGACACTAggaccagagagagagggagcagcacacacacacagagagacagagagacagagaggcagagaggcagagagagggacagagagagagagagacacacatagagagggacagacaaagagagagacagagggggacAGAGACTCACTCTCTGGCTGCTTCTCGTTGGGCGTGATGGAGCGCACAAAGTCCTGTGGCGTCATGTACACCTCGGCGTCCCCGTGCTCGCCCACGATCTTCAGAGTGGCAAAGTAGCGGAAGATCTTGTCGGGGGTGGAGTAGGCCCGGATCCGGTTCTCATACTCCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174055 True 6120 lncRNA 0.55 2 843528 849673

Neighbor

gene id symbol gene type direction distance location
AMCG00002740 LOC107702684,LOC107660219 coding upstream 7365 829429 ~ 836163 (+)
AMCG00002741 cdh23,LOC106579432,LOC107679169,LOC107549130 coding upstream 43512 776590 ~ 800016 (+)
AMCG00002735 NA coding upstream 83321 736334 ~ 760207 (+)
AMCG00002736 cdh23 coding upstream 115041 718130 ~ 728487 (+)
AMCG00002739 NA coding upstream 136327 700320 ~ 707201 (+)
AMCG00002747 mcu coding downstream 41002 890675 ~ 893192 (+)
AMCG00002746 NA coding downstream 50150 899823 ~ 904354 (+)
AMCG00002753 NA coding downstream 141911 991584 ~ 1008956 (+)
AMCG00002760 NA coding downstream 254075 1103748 ~ 1107546 (+)
AMCG00002761 NA coding downstream 355145 1204818 ~ 1216164 (+)
G138379 NA non-coding upstream 1800 819326 ~ 841728 (+)
G138378 NA non-coding upstream 21963 813293 ~ 821565 (+)
G138376 NA non-coding upstream 32639 808896 ~ 810889 (+)
G138375 NA non-coding upstream 34915 808056 ~ 808613 (+)
G138356 NA non-coding upstream 81333 760714 ~ 762195 (+)
G138393 NA non-coding downstream 59714 909387 ~ 911080 (+)
G138399 NA non-coding downstream 88474 938147 ~ 938495 (+)
G138475 NA non-coding downstream 238766 1088439 ~ 1088816 (+)
G138502 NA non-coding downstream 526034 1375707 ~ 1395263 (+)
G138562 NA non-coding downstream 1088474 1938147 ~ 1939125 (+)
G138387 NA other downstream 45155 894828 ~ 898423 (+)
G138394 NA other downstream 61437 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 75558 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 239605 1089278 ~ 1093079 (+)
G138476 NA other downstream 246266 1095939 ~ 1097475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000005_01795371_01878902 MICU1 coding CI01000005 null 1795371 ~ 1878956 (+)