G138873


Basic Information

Item Value
gene id G138873
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3376248 ~ 3378038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174679
TTAAGTGTACTGAAAGTAGCAATTTTTATTTGAGTTAAAATTATTTACAGGTAACCAAAGACATTATTCTTGAAACTGGTACAAACTGGTTTTTCTTCCTGCAGTTGGCTTTTATTACTTCAAATAACACAACTGAgaaatactgtataaaataaaaataggattGGATTCAGAAAAGTAGTCTACCATTCTAATTTCCAATAGCCGATATTTACACAACTATGtacacttttgttttccattcataTTCAGGTTTGTAGAGGAGCCTCTTGCAAAGGCCGCAGCGTTCGCCTGGTCACAGATGAGAGAAATATAGACGGCTCTGGTGCGGCTCTCATCTGTCCGGCTGCTCGGGATGCAAGAGGCTGCTCGGCTCACTGGGGTTTCTATTGAAGCCCGGATGTGAAAGATCCAACACTTCTTTTACTCCCCCGTTTATGCTGAAGCGCTGCAGGGACGATGATGCGAGTCTGAAATATACATTAGATAAGAAAAGGGAACCAAACGCGCCCATGTCCTCTCGGCCCCGGGTTGCCGATTCCTGGCTTGCCACTACACCAGGGTCCGGTCACTGTGGAAAGCCCCCCAGAGTTGACTGGCTTTTATCTGGGTTTGAAATGGTGTTTTTACCTCCAGACTCGGTACTCTACTGTAAAAACCATGCTAACAGCTACCTATTCACCTAAGCAACAGGAAGATGTGAATGGCATCTGACTACTGCACTCCTGACAGGATATCAAGGGATTCAATCAATTACAAGATCACGGTTCTCAATTAATTCaaaggcaaacttaaaaaaaacaatgaaatgcttGCAGAAAGGATGAGCTCGGTCCGGGTGGCGATGCAGTAGTCAGATCGCTCGAAAACCACAGTAAAGACGTATGGCTCCTCTCTCCGATTCGGCAGTCggtgaaaaagaaagagagagaaaggaaagaaaggggAGTCCACCTCTCCGGGGCGGCGGGACAGAGCTGATCGCAGAGCATTCGCTTAGAATTCAAGTGCTTTATTTGAAAACgtacttaaaataattttccagtCCTGCTGATTGGTTTAAAAAGATTTTTAACATCTAAACATCGCCGAGGGGTCGATTTGGTTTAATCCATCACACCTCGTCTCACAATCGTTCGTTTCCAGCGTTAGCACTCGGTGCCACGAATGAACCCTAGAACTGTCCCTCCGCGGTGACAGCGTCCCGGTCTTCAGACGAGAGCTTCTACACGCGTGAACGGCGTAGGACATCCCGAGCGCCTGGGACCGGGACGGTGGGAGACGAGGGCTTCAGCGGTGCTGCTGAAACCTTCTTCGGCAGAAGACCGCTCCCAACATCCATCTTTTCCGAACCACGCGCACGGCACCGCCATCCTATTAAAACGGAGCGATCAGTCACCCAGCCTGCCCCCCCTGAGGCACCGAGGCAATCGGTCTGTGTCTTTGAAGCAGGAGCGGCACCCCCCCCAGCCACGAGGGCGATCGCCCCGCCGTCCTCCTGCCGTGAACACTGCCGGATCCTGGACTACTTGTTCCGCATTACACGATAGCTTATTAAAAGGGATCTGGGTTCGAGAGAGTAAAATgagcaaacaaaaccacacacaccaAACCCGCACACACGAGAGCAGAGATGACTTTGGTACAGGAGGCGGCTCGGGGGGTCGGTCCGCTCTTCCCGTGCGGCTCGAGCGCCGGGGGACATTCCTGCGCTTCTACCGTGCCAGTAAAAACGTCCTTTGCCGAATTCTAGATGAGAGAAACTCAGGGCACGTAGGCACTTcagtgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174679 True 1791 lncRNA 0.49 1 3376248 3378038

Neighbor

gene id symbol gene type direction distance location
AMCG00002817 NA coding downstream 30914 3331717 ~ 3345334 (-)
AMCG00002820 plekha1 coding downstream 47292 3304565 ~ 3328956 (-)
AMCG00002818 LOC107660481,LOC107745581,LOC106578991,LOC107598034 coding downstream 82821 3270489 ~ 3293427 (-)
AMCG00002813 NA coding downstream 157010 3213625 ~ 3219238 (-)
AMCG00002812 NA coding downstream 169692 3198668 ~ 3206556 (-)
AMCG00002819 NA coding upstream 568 3378606 ~ 3379298 (-)
AMCG00002824 grid1,LOC107375932,LOC106530676 coding upstream 287411 3665449 ~ 3667197 (-)
AMCG00002829 NA coding upstream 599618 3977656 ~ 3979035 (-)
AMCG00002830 NA coding upstream 602781 3980819 ~ 3980998 (-)
AMCG00002837 NA coding upstream 630617 4008655 ~ 4016581 (-)
G138799 NA non-coding downstream 263166 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 655544 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 661560 2714377 ~ 2714688 (-)
G138737 NA non-coding downstream 668173 2707869 ~ 2708075 (-)
G138720 NA non-coding downstream 684379 2691430 ~ 2691869 (-)
G138906 NA non-coding upstream 547129 3925167 ~ 3928618 (-)
G138948 NA non-coding upstream 697577 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 1077754 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 1087916 4465954 ~ 4466189 (-)
G139026 NA non-coding upstream 1098426 4476464 ~ 4476663 (-)
G138741 NA other downstream 656829 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 2450850 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 2554657 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 3186911 184121 ~ 189337 (-)
G138245 NA other downstream 3229408 144926 ~ 146840 (-)
AMCG00002828 NA other upstream 550723 3928761 ~ 3953324 (-)
G138932 NA other upstream 623612 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 3684435 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 3970773 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 4553128 7931166 ~ 7938241 (-)

Expression


Co-expression Network