G138906


Basic Information

Item Value
gene id G138906
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3925167 ~ 3928618 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174717
AACCTCTTACACGtgtagcttttatttatttatttatttattttgtcctgaGCTGCAGCTGACTGAACAGATTAAAACTTGAAGTTAaatagttataaaaaaataatataaataaaagaaaacatttagtcAGCTGCTTCAAACCAGTGGCGAGGTCTCtgtgtaaaaatatgtaattcccTTATTTCTAGTGCCTGgtagtgtcagtgctgtgtttctCCCCTCAGTCGTACCCACGTCACACCCCTCGTGCGTTCCTGCGGGGGTCCTCACTACACGGAGGCTGAACTTCTCTCACCGTTTATGCAAATGGAGCTTTGCCTGAATGTAAatatacacgtatatatataaataatatattatttttttaaagcgaGTGTCTGGGAGAGTTGTTTCAGCCTTCGGGTGTCGTTATAAAGTCCTGTCAGAATAGATTTGCCGtatgtccccccctctctctcacatcCCAGACACAGACCCCACGCCACAGTTCGTATCGGCTGGAGGGGGCTCTCCACACCCAGGTCCACACGGCAGCATCTGCCCGCACATCTGGGAGAGGAAGCGGCACGGGGGGGCATCCGCAGGCTTCAGAAGGGCAGGGTGGGCGCGAAAACAGACGGGCCCTAATGGGATTGCATCGAATCAAATCAAACGAGCCGCTCTCCTCTTCTCCGGGGGCTCGTTTCAGGTGCCGTGACCCTTTTAGGATGTGCTGAACTGTGAGTAAACCACGTTAGCCACGGCGCAGCTCAGAGCaggaggagaaaacaaaaaccgcCAAACACACAAAGCTGGTGTGTCGGGGGGAATCGCAGCAATGCCGTGGTGAGACCAGGTCCTAATTGACATCGCGTTCGTGGCTACAGCGCTCCCAGAAGCGAAGAAAGTGAAGCCGGCGCCCAATTAAAATTCACGAGGCATTTCTGCACGGGGCACCGATCTGTGGACACAGACTCCTCTCGTGGCTCACAGCGACGCCGGTGTGTCTACGCCGCTTACACTCAGGCGTGTTAGAGGGCAGGGGGCGgcagataaaaaaacacataagataacagacaaaaataaagagacagGAGGTTTCACGGGAGACAGGGAAGGGGGTTTGCACGGCTCAGGGGCCGCGAGCAGCTCCGCCTCCCCGAGCGCGGTGGATGAAGGGTGGATTAAGCATGTGTTCTGATGGAGTTGTGTAGCGAGGTATGTAGTGAGGTCTGGAGGAGTTGTGTAGCGAGGTTCGTCAGTGTGTCCACAATGGGGCAGAATGCACATTGATTTAGTCGTCACATTGGGGAGTACAACACcgatattataataataaacacaaacgaAGAGAAGTATCTTTGCTCTCGCCCGTGTAGCCCATATTAGGCCGGTGTGGGAAGcttgaattaaaaatactgttCGCTAATGGATCTTAagttatagaaaatatattaagttGGTCTCGGCAAAGTTGGTCACGTGTGTTGTGTGACGTGTTGTCTGTGGAGGTGTAGGTGTGTAGAGAGTGGGCCGCTGCTCGGTGGAGGGTCAGGGCTGTGCGACACAGTGACGCCATTAGAAGCCGGAGAAGGGACATCGTCGGGTATGTTGTGCCCGTGGTTTTCAAGCGCAGACGCTGTAGTGTCTGTCCTCCACGGAGGCGCGTCTGGGCTCAGAGGTGTCCTTGTGCGATCGTTTAGGCATTCCTTCATTGATACAGCTGGCGGGCTAGTTTGTGTACAGGTTTTTTCTACTTAGGAAAGGCACACACTCACTTGTGCTCACTTACGTTCACACACACCTCCTCACGTCCTCCCCTCTACGGCATCTCCGTTACGCTTCCAGGTGACAGAAGTGTGGTCAGCCAGGCAGGCCGGGCCGGGGTAGGGCGCTGTGTTTTTGGGAGGCTGCAGAGACGCTTGTGCACTGCGCTGGGTCCGGGCGGCTCATACGTAACTGCGAAACGCTCAGCTGGAAAATCTGCAGTAATATGGCGAGAGCGTGAGGATAGAGTTGCTGAAAGCCGCTGTAATCTGaaatgggatttatttattttctcctcaaCCCTGCTGTAGAAGCGGGGGCAGACGTGGGGCGCCGCCGTCCTGCTCTCCCCACTCCGTCACCGACAGACCCTCACTGCTGCACTGAGAGGAAACGGAAAATCGATCCGCCTGTCTTTCGCACATGAGGCTGTATGTgcgtttgtgtgtatatgtttgtgcgtctgtgtgtgtgtgtgtcgcagCGCACTTATgttataacattatgaccattatatatgtatattttgttggtAGTTTTTGAATgggttgaaaaataaataaatatgtaaaaactgCATTGATGCTGTGGAAACCGTAAACTTAGAAAACTAAtataaaaaattatttaaaaaaaacccgATACCTCGCTGCTTCGTCTCGAGTGTCCAGTGATCCGCTCCTGACCCGGAGAAGccacccctcccccatcccAGCCCCCGACTCACTGGCCCTTCCGGGGCCCCAGCCGAGAGGAAGTGAAGTGATCCTTCCCCCGGGCGCACGAGAAATCGCACACGGTTATTTTTGTGTGGTAGCGGCTCATTGATGCGTATGTGTCGGCAACAGCCAGGGGGTCCGAGGGGTCGAGAGGGGCTTCTGTCGGTCGGGGGGGTGTGGCACGGCGTGGCACGCCCCTCGGGTCCAGTCGCCACCACACCGCAGTGTTGATTTGTGGCTCGACTGCTACACACCTGGACAGCTGTGCTATTAATGCTCACATCAGCCAGCCCTCGAGTGGCGCAGCGCACACTGTATGTGCAGCAGTGCCGGACATAGAGCCCCGTCTCCGTATGCGTGTCTCTGTCTCCGTCCGCGTGTCCGTCATGTCACACTTCCCCACTTCCTCTCCTCCCCACGCTGTCCCTGTATCGCTCCTCCTGCACAGGGACGTCAACGCTGGCTGAAGACCCGCTTATCGGCTCTCGACTACAATCCCCCCCGAGCGGACACTGTGTCCGCAGTAagaagaaatgtgttgattggCAATGCatcttgttgttattgtttggttttgtttgttttgttttgttttcactctaATTATTCATTTCAAACTGACAACCTGTATTGCTGCAGTCCTGtttcttcctgtttgtataGTTTGTGCAATACTGTATGAAACGAGCAAACGAAAAGAGAATATAATACTccgtatatgtatatataaaataattgttactaaattgtaaaatgtactatAGAGAAATTTGGTTATATTTAAGGAGgttataaaacaagaaaacacaaaaaaatcagTCCGACGTGCACTTTAAAAGCGATGTTCAGCCATTGCAGCTGACTGACGGCTGGCCCCCAGACTGCGCTGTGTCCTCCTGTGCGTTGACACAGTCCTCTCCTCCCTGTCTCAGCCGTCTCCGGGCCGGCATGCTTAAGGACATAATAAAGACCTCGCACAATCCA

Function

GO:

id name namespace
GO:0045333 cellular respiration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174717 True 3452 lncRNA 0.51 1 3925167 3928618

Neighbor

gene id symbol gene type direction distance location
AMCG00002824 grid1,LOC107375932,LOC106530676 coding downstream 257970 3665449 ~ 3667197 (-)
AMCG00002819 NA coding downstream 545869 3378606 ~ 3379298 (-)
AMCG00002817 NA coding downstream 579833 3331717 ~ 3345334 (-)
AMCG00002820 plekha1 coding downstream 596211 3304565 ~ 3328956 (-)
AMCG00002818 LOC107660481,LOC107745581,LOC106578991,LOC107598034 coding downstream 631740 3270489 ~ 3293427 (-)
AMCG00002829 NA coding upstream 49038 3977656 ~ 3979035 (-)
AMCG00002830 NA coding upstream 52201 3980819 ~ 3980998 (-)
AMCG00002837 NA coding upstream 80037 4008655 ~ 4016581 (-)
AMCG00002836 NA coding upstream 93963 4022581 ~ 4029995 (-)
AMCG00002838 NA coding upstream 105752 4034370 ~ 4035880 (-)
G138873 NA non-coding downstream 547129 3376248 ~ 3378038 (-)
G138799 NA non-coding downstream 812085 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 1204463 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 1210479 2714377 ~ 2714688 (-)
G138737 NA non-coding downstream 1217092 2707869 ~ 2708075 (-)
G138948 NA non-coding upstream 146997 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 527174 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 537336 4465954 ~ 4466189 (-)
G139026 NA non-coding upstream 547846 4476464 ~ 4476663 (-)
G139027 LOC106576780,LOC103360772 non-coding upstream 566410 4495028 ~ 4495418 (-)
G138741 NA other downstream 1205748 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 2999769 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 3103576 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 3735830 184121 ~ 189337 (-)
G138245 NA other downstream 3778327 144926 ~ 146840 (-)
AMCG00002828 NA other upstream 143 3928761 ~ 3953324 (-)
G138932 NA other upstream 73032 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 3133855 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 3420193 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 4002548 7931166 ~ 7938241 (-)

Expression


Co-expression Network