G139238


Basic Information

Item Value
gene id G139238
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5366435 ~ 5366683 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175122
CTAGTCTTGGGTCCCAAAGTATTTCATTTGGTAGGGAACCCAGAATCTGGTACGACCTCTTCCAGACAAATACATGAAGAAATGACTGCTTGCAACAGCTTTTGATCGTAATGACTGTAATTAGTATCAATGGATCTACTCCAAACAATAGCAAATGTCAGGGTTCTTCTCCAGCACCAAAGTAACGTATCTGATTAATTAAGTTAATCGATTGAAAATTCTCCAATCAGGCTCATAAGTGCGTGTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175122 True 249 lncRNA 0.39 1 5366435 5366683

Neighbor

gene id symbol gene type direction distance location
AMCG00002872 NA coding upstream 81363 5276915 ~ 5285072 (+)
AMCG00002871 egr2,LOC107596614,LOC107596611,LOC107739063,LOC107745678,LOC107653961,LOC107593522 coding upstream 132608 5231982 ~ 5233827 (+)
AMCG00002868 jmjd1c,LOC108412835 coding upstream 178989 5153304 ~ 5187446 (+)
AMCG00002867 LOC108412396,LOC103044660,LOC104928862,LOC105891210 coding upstream 341852 5012179 ~ 5024583 (+)
AMCG00002866 exoc6,LOC107695547,LOC107654070 coding upstream 357690 4963957 ~ 5008745 (+)
AMCG00002881 NA coding downstream 13930 5380613 ~ 5383693 (+)
AMCG00002882 NA coding downstream 17169 5383852 ~ 5386429 (+)
AMCG00002880 rhobtb1,LOC107654062,LOC106604002 coding downstream 51992 5418675 ~ 5435914 (+)
AMCG00002888 ank3,LOC107746453,LOC102308332 coding downstream 170807 5537490 ~ 5616805 (+)
AMCG00002884 ccdc6 coding downstream 252544 5619227 ~ 5638109 (+)
G139205 NA non-coding upstream 126945 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 297540 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 564191 4798613 ~ 4802244 (+)
G139044 NA non-coding upstream 653610 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 782268 4583865 ~ 4584167 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 73094 5439777 ~ 5442279 (+)
G139351 NA non-coding downstream 451369 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 771438 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 827928 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 831587 6198270 ~ 6198502 (+)
G139176 NA other upstream 267691 5096731 ~ 5098744 (+)
G138941 NA other upstream 1336511 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1770327 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2250354 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2871841 2492086 ~ 2494594 (+)
G139492 NA other downstream 781065 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1700172 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2010004 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2542569 7909252 ~ 7920908 (+)
G139784 NA other downstream 2556499 7923182 ~ 7926832 (+)

Expression


Co-expression Network