G139488


Basic Information

Item Value
gene id G139488
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6138121 ~ 6140671 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175425
gtgtgtgtgtatatatattggcTACAATGTTATTATGTATAATATCTCCACATTGTGTATCAATCATAAAATAGtacaagtaaaaatacattagtttCACACAAcccatttgtttctgttgttgtttttacaataataataatttcatactTAATTTCACTTCAATCATGTTCTACTCTTATTCTCCCTCACTCATACCAAGACATATTtacagtattcattttctttattaatgccAGAGTTTCAAAAGCATCTTCATGACTTTAACTCATcttgtttgtaatttatttagtcGTAGGGAACACTTTTCTCGTGCCCAAGAGGGCTCTGATATTTTAATGCCTTCTTTATACAATGCAATTGCTTCCTCAGGAGATTCTCTATGATAGTACTTGAAATTGCCATAATAGAGATAAAATGCTTGCACATCTTTgggtttcatttcagataatCTCCCAAACATCGCCATAAATATTTCTTCTGCTATTTCTTTGTCTCCGCACTCTGCATACATCTCTGCGAGGTCAAACTCAATATAGATGTAATTTGGCTGAACCCTCAGAACTTCGTTAAAATTTTCAATGGCCCGACTTAAAAGACTGTTCAACTCTTCTCGATTATCTCGATTGGATTGTTTCTCAATACCGTATTTCCACTTGCAACAGAGTGCTAACTGATGTTTCAGAAAACACGTATCTGGAGACAACTGCAGAGCCCTTTCCAACAGTGCAAAAGCTCTGTCTAATGAGCCATGCAATCTAAATAATTTCACTACATTTCGGATGACCTGGGGATTATCCTTTGCCTTCTGTAAAGCTTGCTCTGCTAGCTCTTGGGCTTCCTGCATATAGCCATACTCTGTTAGCTTTAAGCCCAGGTATATAGTGACAAAAGCATTTCCGGGGTCTAGTTGTTTCGCAAGCCTTAACTGAGGAAGAGCAATTGAATCTTGTTCACTGCTCATCCTTGTACCTAAACCTTCAAGCCGGGTAAGGACAATAGCATACCCTGAATGCCATTCCTTGTTTTCTGGTTGTTCTTTTAGAGCCATCTCAAAAAATGTCTTTGCCAACTCATAATTCTCCGATGAAAACTTGAGAAGAGACCAGGCCTTTTCCCCATACAATTCTGGATGAAGGATGACAGGAGAAGCTCTGGGGAACTTGTCTGCAATCTGTGCCAGTTTCTCCAGGTAGCGCTGAGCGTTAGTGTGGTCCCCCATCTTGTAGTACAGCCAGGCAAAGTCTCCGTAAGGAACAATGAGCATCTTCTCACATTCATTGTCAAAGTTCTTCCTGGTAGTTTTATCAGCCTCCTCTAGGCTTGCTAGTGCTGCCTCAGGTAGACCTTGCAAGTATTTAACGTACGCTAGGAGACTGTACAGTCTTCCAAGCCAATTCCCTTCTTCACCTAAATAATACTCAATGTCATTTTCtagtctctctctcaggtcatTGAGATCAGGTAAATCTCTCTTGAGACCCCAGGTGAAGTGGCA

Function

NR:

description
V-type proton ATPase 21 kDa proteolipid subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175425 True 1498 lncRNA 0.40 2 6138121 6140671

Neighbor

gene id symbol gene type direction distance location
AMCG00002910 NA coding upstream 5902 6117729 ~ 6132219 (+)
AMCG00002908 LOC107553481,LOC107753437,LOC107669213,LOC107683711,LOC108413682,LOC107715956,LOC105902286 coding upstream 27609 6094105 ~ 6110512 (+)
AMCG00002911 NA coding upstream 46055 6086560 ~ 6092066 (+)
AMCG00002904 NA coding upstream 99213 6020258 ~ 6038908 (+)
AMCG00002903 NA coding upstream 121876 6011828 ~ 6016245 (+)
AMCG00002909 NA coding downstream 17102 6157773 ~ 6158567 (+)
AMCG00002916 acta2,LOC106531354,LOC107683715 coding downstream 48693 6189364 ~ 6193500 (+)
AMCG00002917 NA coding downstream 69057 6209728 ~ 6212571 (+)
AMCG00002918 NA coding downstream 87516 6228187 ~ 6234155 (+)
AMCG00002915 NA coding downstream 114499 6255170 ~ 6266600 (+)
G139351 NA non-coding upstream 318996 5818052 ~ 5819125 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 695842 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 771438 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 898631 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 1069226 5067472 ~ 5068895 (+)
G139498 NA non-coding downstream 53940 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 57599 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 58688 6199359 ~ 6199856 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding downstream 60532 6201203 ~ 6201470 (+)
G139507 NA non-coding downstream 62173 6202844 ~ 6203059 (+)
G139176 NA other upstream 1039377 5096731 ~ 5098744 (+)
G138941 NA other upstream 2108197 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2542013 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3022040 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3643527 2492086 ~ 2494594 (+)
G139492 NA other downstream 7077 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 926184 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1236016 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1768581 7909252 ~ 7920908 (+)
G139784 NA other downstream 1782511 7923182 ~ 7926832 (+)

Expression


Co-expression Network