G139505


Basic Information

Item Value
gene id G139505
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6199359 ~ 6199856 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175446
ATTGATTTCAACTTAAATAACTGcagtgttttctttcagttttacaaTTCATATGCAAGTGATTGGTGTACGAAGTGGAAGACTTTTTAGGAAAACCTGGTGACGGACACACAAGACAAAGACAAATGTGTTTGGGAACTAGATACTGACTCTGTATGGCGCCCAGTGTGGCAGCTGGATTCAGGGCTTTGTTGACGGGAGGGGATTGGTTGTTTTTCCGGTTGGCCTCGGGGCGGGAGTTGTTTTTGGGAGGACGGGCCAGACAGGACCCATCCGTTTGCTCAGGCACTTTGTGGACGACCTCATCTTTCTTGTTGGCCAGCTCCTGTCTGCGCAGTTGGTCTTCGAAGTAGCGGAACTGCTCCGattcaatttgcatttttcGCAGCTGAGCCACCCGttgcttctcctcctccagcaaGGACAGCTTTTTCATCTGCAGACTGCAATCCTCCACAGGCTGGCTCTGAaaacacaggcaggcagaccAGTTCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175446 True 498 lncRNA 0.50 1 6199359 6199856

Neighbor

gene id symbol gene type direction distance location
AMCG00002916 acta2,LOC106531354,LOC107683715 coding upstream 5859 6189364 ~ 6193500 (+)
AMCG00002909 NA coding upstream 40792 6157773 ~ 6158567 (+)
AMCG00002910 NA coding upstream 67140 6117729 ~ 6132219 (+)
AMCG00002908 LOC107553481,LOC107753437,LOC107669213,LOC107683711,LOC108413682,LOC107715956,LOC105902286 coding upstream 88847 6094105 ~ 6110512 (+)
AMCG00002911 NA coding upstream 107293 6086560 ~ 6092066 (+)
AMCG00002917 NA coding downstream 9872 6209728 ~ 6212571 (+)
AMCG00002918 NA coding downstream 28331 6228187 ~ 6234155 (+)
AMCG00002915 NA coding downstream 55314 6255170 ~ 6266600 (+)
AMCG00002921 atad1,atad1b,LOC106589392,LOC107680273 coding downstream 120280 6320136 ~ 6329764 (+)
AMCG00002925 NA coding downstream 197601 6397457 ~ 6409095 (+)
G139504 NA non-coding upstream 857 6198270 ~ 6198502 (+)
G139498 NA non-coding upstream 2329 6194611 ~ 6197030 (+)
G139488 NA non-coding upstream 58688 6138121 ~ 6140671 (+)
G139351 NA non-coding upstream 380234 5818052 ~ 5819125 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 757080 5439777 ~ 5442279 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding downstream 1347 6201203 ~ 6201470 (+)
G139507 NA non-coding downstream 2988 6202844 ~ 6203059 (+)
G139531 NA non-coding downstream 97878 6297734 ~ 6311270 (+)
G139573 NA non-coding downstream 218582 6418438 ~ 6418798 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding downstream 220310 6420166 ~ 6423168 (+)
G139492 NA other upstream 46239 6147748 ~ 6153120 (+)
G139176 NA other upstream 1100615 5096731 ~ 5098744 (+)
G138941 NA other upstream 2169435 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2603251 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3083278 3107458 ~ 3116081 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 866999 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1176831 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1709396 7909252 ~ 7920908 (+)
G139784 NA other downstream 1723326 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1837721 8037577 ~ 8044413 (+)

Expression


Co-expression Network