G139531


Basic Information

Item Value
gene id G139531
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6297734 ~ 6311270 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175484
CAGTGACAAGAATGAGACTTTAATTGGTTTTAAGTGGAGTTTATAACACTAAGATAAAGGGTAGttaaacacatacaataacaaaCGGACATCTGATTTGTATGAGCATCATTATAACCTGTACAATTTCATACATTGTTGGTTGTGTATTCTCAGTGCATAGCATTACACACAGAGCAACTTTTGCACAGCACAATAGTATCCGAACAGGCTGAAATGGAATAAGGCTGTTTTACAGACTGAAAATATACCGAGTATACATACTCTACATAGAATGAAGTCCGAAACGGAGCGGACAGAGCAACAGGCCGCCCTGTCCAAGACTGCAGGTTCAGCCCCTTTGATTTAGTGCACAGTTCCACCCCTTCCATCTGCATGCaggacaaaatgttttttttttgtttttttttgtttgttttttttaaacagtatttaacaatttttttttcattatttatttttttaaactaaacaagAGGCACTTTGTGGCAACCACAGGCATTGTTAAAACATATTGCACAAATCTGCTAGAAACTAGTGACATGAAACTTGCACACCGGCACCCTTATGAAGATTTTAAAGCTGAAACTTAATTTTGATGCTGCCTGTGAACTCCGCCCAAGTTTTAGAACCCGTGCCACAGTCCAGGACCTCGAAGGCTGCCCggggagtttgtttttttctttatttttttcctcttcttcttgtTTCCAACTTAAGGTACTGTGGCAAATCTttacaaagtggggctacagatGTTTAGGGATGGCCTGAGGCCTAACAGTAAGCTCCTTAACAGTGATGCCCTTGAAtagtttcatacatttaaactgcTGAACATCCAAAGTAATAAGCATACGGTCCAGAAAGTCAAGGGAGAGAAGAAAGAATACCTGCAGAATGTCTTTACCAGAATATGAATACtgtcataaatatatttcattatttttttcgtaaaaaaaaaagtcaggacATTTTCAGTCGAAGTAATGCGTCCGATTCtatgggtggggtggggtgggggtgtatGGATACAAGATTAAGGTACACTAATGCCATTTTATTCCACCTCCAACATCAAATTGCTTGCAAGGcgttttggggggaaaaaacaaattatggaCCGCTGACTGAAACCCTGCAAAAACCTGTAACAGTGCAAAAGTCTAGTACAATGTTGCTCTTTAAATGTAGCTTTAAATAAGTACTTAAACTAGCTAGTCAGTGCTTGGGCAGAAAGGTAGATTTCCAAAGCAGTAGCAATGTAAGCATTGTCAACTTCAAGTAAGGCAAAGAATACCTCCCATAGGCTACCCctccaaataaaacacacaaacatcacaAATCAAAAAGGACAAGAAGCTTACTTTTGGCAGGTTTTCAGTGAGTTGATAAGATgtaaacaaaatcagaaaactTAAAAttcctacataaaaaaaaaaaaaagttaaatgggTTGGCTAAAGTatatctgctttaaaaaaataaataaaaccctccTTTCAATACCTAGGgaatatattctttatatataaaggCGATTTGAACAGCATGTGCAGTGGGTTAATGATGAGGGTGGAGCCTAAAATGTCAACAGTACAGTAAAGGCAGCTTACATCTCTACCCGCTGGGAATATTCCTGCCCAAGTTTTTGGTCTGGCCGATTGCAATCCACCAGCCAGGTGTTAGGACTTAATTTggcatgcttaaaaaaaaaaaaaaaaaaaagttttctatACTTAAATATCCTCACAAAAGGGCTTGTAGATTTCTTTTCTCTGAAGCAAGCTGGAGACTTTCATAAAAAATCTGTAGCTGCAGTATTGCCCATTCCCGATGGAATGACACAGGTTTAAAAATGgagttggtggggggggggagaaaaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175484 True 1898 lncRNA 0.38 2 6297734 6311270

Neighbor

gene id symbol gene type direction distance location
AMCG00002915 NA coding upstream 31134 6255170 ~ 6266600 (+)
AMCG00002918 NA coding upstream 63579 6228187 ~ 6234155 (+)
AMCG00002917 NA coding upstream 85163 6209728 ~ 6212571 (+)
AMCG00002916 acta2,LOC106531354,LOC107683715 coding upstream 104234 6189364 ~ 6193500 (+)
AMCG00002909 NA coding upstream 139167 6157773 ~ 6158567 (+)
AMCG00002921 atad1,atad1b,LOC106589392,LOC107680273 coding downstream 8866 6320136 ~ 6329764 (+)
AMCG00002925 NA coding downstream 86187 6397457 ~ 6409095 (+)
AMCG00002926 NA coding downstream 99156 6410426 ~ 6419383 (+)
AMCG00002928 LOC106589397 coding downstream 143602 6454872 ~ 6455141 (+)
AMCG00002930 prkg1,prkg1b,LOC107708873,LOC107695529,LOC106589397 coding downstream 152443 6463713 ~ 6464276 (+)
G139507 NA non-coding upstream 94675 6202844 ~ 6203059 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding upstream 96264 6201203 ~ 6201470 (+)
G139505 NA non-coding upstream 97878 6199359 ~ 6199856 (+)
G139504 NA non-coding upstream 99232 6198270 ~ 6198502 (+)
G139498 NA non-coding upstream 100704 6194611 ~ 6197030 (+)
G139573 NA non-coding downstream 107168 6418438 ~ 6418798 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding downstream 108896 6420166 ~ 6423168 (+)
G139633 NA non-coding downstream 751253 7062523 ~ 7066374 (+)
G139656 NA non-coding downstream 841267 7152537 ~ 7152739 (+)
G139667 NA non-coding downstream 885608 7196878 ~ 7197097 (+)
G139492 NA other upstream 144614 6147748 ~ 6153120 (+)
G139176 NA other upstream 1198990 5096731 ~ 5098744 (+)
G138941 NA other upstream 2267810 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2701626 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3181653 3107458 ~ 3116081 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 755585 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1065417 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1597982 7909252 ~ 7920908 (+)
G139784 NA other downstream 1611912 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1726307 8037577 ~ 8044413 (+)

Expression


Co-expression Network