G139572 (a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758)


Basic Information

Item Value
gene id G139572
gene name a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6420166 ~ 6423168 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175538
TGTATaagacatttattaatattcaagaatcaaacaataataaagaaaaacattggaATTATCCCAGTAGTACTCCATGATTTGCAGCACAATGAAGATATTAGTTTCCAGATTTCCAATTTACGTTCATTTCTTTGCTTAATGGTGATTTCTTACAGGTTCTTGACCGATAATTGAGTCacattgaatttgagatatttaTATATCCAAAAAAAAACGAActctatacaaataatattgcatttctgGTACAAAAATAAGTTCTAAGTGCTTTACTCACACTTTAATACTGTTACTTGTACTTCCCGCTCTGGCTTTTCCCCTCGCTTCAGGTTACGAGAAAGTCCGTTATTGACTcctaaatattgattttgaacTAAACTGTGCGTGTTTAAAAACAGGTGTTCTGTCGAAGCAGCAATCATATAACCAGCATGTGTAGGCCGTGCATCGAGACATGAATTggatttaaatggaaaatgtccaATGGGAAAATACAGAATGATTCTTTAAGCCATGGCACTAGTAAATTGCAAATTTAATGTCAGATATGTTCTAAAATTTGTATAATTGGTTTTATAAAGGCTCTGAAAATGGTGTGAATGCATAACATTAATCCTCTTAACAGGACTTTGAGTTCCTGAGCCTGCAGGGAAAAGCTTCGTGACCAAGTTGCCATTTTAGTTTAACTCCTAAAAAGGCAACACAGAAACCTTTATCATCGAGGGCTGCTGATCGAACAGAAACCCATCAGTACACGGACAGTAAAGTTTCGCAGCTTATCGGTTTGTTCCATTTTTCTCCTTCTGGTCCACCAAAACatcagaaaaaaggaaatattttgtttggtaAATACTgagtaataaaataactaaactaaagaactaaacaaaaaaacagagagaataAAGTCAGCTCTACATATAACAGATAGTTAACTAAAACTTGAGGTTAATGTCTTAAAGCACATGTGCTAATCTTACTAATATTATAAAGAAAGGCAGAAAAACCGCCCAATGAAATGTTTGCCTCATCCCCAGACTCTCTCTGCCTTGCTCTCTAACTGTGTATTTGTACAGGTGTAAAAATTAGGCAGTGTTAAGTAGGACGTTGTACTGCGTTTATGTTGGAATATTAAtgaagtacatttaaataaagaatcACATAGGACAAAAGGGTCGTATTCAGATGGATGCTTGAGGCAGGTTCTCTATGGCGTATCATTCATTTGCAGAGGagaaaataatagtttattttctgaGAAACTTTCTTTACAGGGAAACTTTTTgttaaatgtctgaaatgtctgtatttattttagtccaGCATCTACTTCAGAGAGTTCCAGTTAAAGGACATTCAGGAAACTGGAATTGGCATTTCTCATTCACATTGATAACACCTTCTTATATGATCACATATCATTTTGATGCGTTTCCTGTTACTTTTGGAATCGGCAGCCTGTATATCAATGATGCTGCTTTGAGGGAAAAAACTTAATGTGGTTTACATTATTATACTATTTTTCATCCATCACTATGCCTAACACTggcatacaaaagaaaaagaaaaaactaagaaaacattaaagtaaGCGTTGTGGTTTTGTAAACATGTTGTACAAACTAACCCATTCCTGAGAAACGTCAAGTAGGACTAAAAGCATTTGAAActataattaaaccatttaatcaTCACATGTATCATTCAAATAATTTGCTATGACTCCACTACAAATGTCAACTACAGCGATCACCAGAATCAAACTAACTCCATTACATCATCGCAGCTTAAACGAGGATCTGGCAGACAGGGTCAATACACGGGAGGCCGAGTCCTCAGAATACGCCGTAGCCGTCTCCACGCGTGGCCACCGCGAAGGCCGGGTACGCCTCGTAGGTCGCGTATGCTGCCAGATCTTGTCCCAGCGACACGGCCTGTTTGAGCTGGGAAGCTGCCACGGTGGCGGCGGTGTTCGCTATTGTATACCCTGCTGGGAACGAAGCAGCCGTGGAGGCCTCGGCGCCCTCTGGGTGTAGACCCAGGATCTGCAGTGCGTGCTCCGCGGCATAGACTTTGGCTTCATCCACGGAGCCACACAGCTTGGGTGGGGTGAACGGGTGCCTGCGAGCAGAAAGTGGCCCTTTAGTGTCTGGTTATTAAAgaaggaatatttttttaaaggtaaatgttattttctcagCCTACACGTTGGGGTACTGAGTGGCGAGCGCGGGGATGGTCACTTTGTACAAGAACAGCTGTCTCTGGTCGGGGCTGATGGCTGAGTGGAGCTGGTAAACTGGTTGTCCCCAGTTATTCTTCTGGCAGATGTCCTCCAAGATCTGCAACATTCAAACTGAATTATGAAGACGATGATGGTATTATTGTTGCTAACGTGGCACAACTGTTGATTCATTGCAATTAGTCAGCTCTGAGGTGTTCATGGCTGGAGACCATTTGCATGTGTACCTGGGGAGCATGTTTAATGCCTTGAGGTTTCAAAGTAACGGGGTTCATGGGTGTGAGCTCCATGCCGGGCAGCAGGTCGTACAGTTTGTCTTCTGTCCTCTTGTCTGCCTTAAGCTGGTATCCGGTGTAGCCGCGGCCAATACCTGCGTAAGCAAGGTAGCCCCGTCCGCCCAGCCCACGGACTCCGGCAGCCCCTACAGGTACATTCATGTAAATGTCTAGGAATGTAAGAAGGCATTAAATCAACTCAAATCACTGTAGATCAGAAGGAATGATGTCATTGTTGCCCAAAACCTGCGCTACACATGTGGACAGTATTTGGAAGGTTTTTCACCAATAAttcaggatttttttattttttattgattaatgtaattatttgtttatttgatggCAGCCGAAATGAT

Function

symbol description
a1cf Predicted to enable mRNA binding activity. Predicted to act upstream of or within mRNA modification. Predicted to be part of apolipoprotein B mRNA editing enzyme complex. Predicted to be active in nucleus. Is expressed in liver. Human ortholog(s) of this gene implicated in gout. Orthologous to human A1CF (APOBEC1 complementation factor).

NR:

description
PREDICTED: APOBEC1 complementation factor isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175538 True 2879 lncRNA 0.40 2 6420166 6423168

Neighbor

gene id symbol gene type direction distance location
AMCG00002926 NA coding upstream 783 6410426 ~ 6419383 (+)
AMCG00002925 NA coding upstream 11071 6397457 ~ 6409095 (+)
AMCG00002921 atad1,atad1b,LOC106589392,LOC107680273 coding upstream 90402 6320136 ~ 6329764 (+)
AMCG00002915 NA coding upstream 153566 6255170 ~ 6266600 (+)
AMCG00002918 NA coding upstream 186011 6228187 ~ 6234155 (+)
AMCG00002928 LOC106589397 coding downstream 31704 6454872 ~ 6455141 (+)
AMCG00002930 prkg1,prkg1b,LOC107708873,LOC107695529,LOC106589397 coding downstream 40545 6463713 ~ 6464276 (+)
AMCG00002929 LOC106578950,LOC106589397 coding downstream 133302 6556470 ~ 6575271 (+)
AMCG00002931 NA coding downstream 155815 6578983 ~ 6581030 (+)
AMCG00002938 NA coding downstream 652106 7075274 ~ 7077227 (+)
G139573 NA non-coding upstream 1368 6418438 ~ 6418798 (+)
G139531 NA non-coding upstream 108896 6297734 ~ 6311270 (+)
G139507 NA non-coding upstream 217107 6202844 ~ 6203059 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding upstream 218696 6201203 ~ 6201470 (+)
G139505 NA non-coding upstream 220310 6199359 ~ 6199856 (+)
G139633 NA non-coding downstream 639355 7062523 ~ 7066374 (+)
G139656 NA non-coding downstream 729369 7152537 ~ 7152739 (+)
G139667 NA non-coding downstream 773710 7196878 ~ 7197097 (+)
G139827 NA non-coding downstream 1529958 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 1575045 7998213 ~ 7999259 (+)
G139492 NA other upstream 267046 6147748 ~ 6153120 (+)
G139176 NA other upstream 1321422 5096731 ~ 5098744 (+)
G138941 NA other upstream 2390242 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2824058 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3304085 3107458 ~ 3116081 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 643687 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 953519 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1486084 7909252 ~ 7920908 (+)
G139784 NA other downstream 1500014 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1614409 8037577 ~ 8044413 (+)

Expression


Co-expression Network