Gene
RNA
| Item | Value |
|---|---|
| gene id | G139593 |
| gene name | LOC100846954,LOC107575789 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030139.1 |
| NCBI id | CM030139.1 |
| chromosome length | 23121578 |
| location | 6482267 ~ 6510125 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| transposase-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU175564 | True | 279 | lncRNA | 0.52 | 2 | 6482267 | 6510125 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00002927 | a1cf | coding | downstream | 52827 | 6422004 ~ 6429440 (-) |
| AMCG00002923 | NA | coding | downstream | 127401 | 6345840 ~ 6354866 (-) |
| AMCG00002924 | papss2,papss2b,paps2,LOC107753426,LOC107584134,LOC107680272,LOC107724695 | coding | downstream | 137444 | 6331650 ~ 6344823 (-) |
| AMCG00002922 | pten,LOC104929647 | coding | downstream | 162487 | 6297737 ~ 6319780 (-) |
| AMCG00002920 | NA | coding | downstream | 254524 | 6214859 ~ 6227743 (-) |
| AMCG00002932 | LOC106589399,LOC101467287,LOC102215614 | coding | upstream | 135507 | 6645632 ~ 6737274 (-) |
| AMCG00002933 | pcdh15b,LOC108273410,LOC106578947 | coding | upstream | 233609 | 6743734 ~ 6756791 (-) |
| AMCG00002934 | NA | coding | upstream | 530155 | 7040280 ~ 7059888 (-) |
| AMCG00002936 | NA | coding | upstream | 567809 | 7077934 ~ 7081623 (-) |
| AMCG00002941 | NA | coding | upstream | 679212 | 7189337 ~ 7197989 (-) |
| G139496 | NA | non-coding | downstream | 323504 | 6157743 ~ 6158763 (-) |
| G139249 | NA | non-coding | downstream | 1085708 | 5396339 ~ 5396559 (-) |
| G139039 | NA | non-coding | downstream | 1898095 | 4583865 ~ 4584172 (-) |
| G139029 | NA | non-coding | downstream | 1970960 | 4507504 ~ 4511307 (-) |
| G139028 | NA | non-coding | downstream | 1985905 | 4496162 ~ 4496362 (-) |
| G139639 | NA | non-coding | upstream | 491540 | 7001665 ~ 7073536 (-) |
| G139668 | NA | non-coding | upstream | 708744 | 7218869 ~ 7219192 (-) |
| G139752 | NA | non-coding | upstream | 945419 | 7455544 ~ 7458491 (-) |
| G139825 | NA | non-coding | upstream | 1435927 | 7946052 ~ 7946521 (-) |
| G139867 | NA | non-coding | upstream | 1600900 | 8111025 ~ 8115245 (-) |
| G138932 | NA | other | downstream | 2479463 | 4001650 ~ 4002804 (-) |
| AMCG00002828 | NA | other | downstream | 2528943 | 3928761 ~ 3953324 (-) |
| G138741 | NA | other | downstream | 3762848 | 2718208 ~ 2719419 (-) |
| AMCG00002752 | p4ha1,LOC107753313,LOC106578992 | other | downstream | 5556869 | 920788 ~ 925398 (-) |
| AMCG00002743 | psap | other | downstream | 5660676 | 805760 ~ 821591 (-) |
| AMCG00002935 | LOC106589936 | other | upstream | 552348 | 7062473 ~ 7066350 (-) |
| AMCG00002945 | NA | other | upstream | 838686 | 7348811 ~ 7352821 (-) |
| AMCG00002970 | cj104,anapc16 | other | upstream | 1421041 | 7931166 ~ 7938241 (-) |
| G139933 | LOC108443181 | other | upstream | 1975236 | 8485361 ~ 8494596 (-) |
| G140006 | NA | other | upstream | 2336907 | 8847032 ~ 8847840 (-) |
